Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 >seq2 Length=4789688 Score = 98.7 bits (108), Expect = 1e-15 Identities = 338/519 (65%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| || | ||||| |||| ||| ||||| | || ||||| | || | | || Sbjct 2859950 GTTCCTTGCATCCGCAAGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGTCC 2859891 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 || ||||| | ||||| || || || || ||||| || | || || || || Sbjct 2859890 ACCTTTGCTCAGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCC 2859831 Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 ||||| | || || | | || || | ||| | | ||||| || ||||| || ||| Sbjct 2859830 TTTGCTTCGATCTTCTGGCTGAAGAAGCGTGGTC-TGATGCCTGGTCTCACCTTCTCCAA 2859772 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATTATAATA 52786 |||| |||| || || || || || ||||||| || ||||| ||| || | || | | Sbjct 2859771 CGAGCTGATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCCCA 2859712 Query 52787 CGCGCGTTAAAGAAAAATTGTCATATGAAAAA-ATTCT--AGA-CATGTTTAAAGAGGCC 52842 | | | || | | | || || | ||| | ||| ||| | | || ||| Sbjct 2859711 C-CTC-------AACCACCGCCCTAGCAAGGAGATTGTCCAGAACATCATCACCGACGCC 2859660 Query 52843 GTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC 52902 |||| || || | ||||| | ||||| ||| | ||||| || | ||||||||| Sbjct 2859659 GTCGCGATCGAGCAGGAGTTCCTGACGGATGCTCTGCCCGTCAACCTGCTTGGCATGAAC 2859600 Query 52903 GCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGT 52962 || | | |||||| ||||||||||||| || || ||| |||| | || || || Sbjct 2859599 GCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGACTTCTCGTGGCTCTTGGC 2859540 Query 52963 CAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAG 53022 | ||| ||||| || || || ||||| || ||| ||||||| ||||| Sbjct 2859539 AACAAGAAGTACTACAACGCCACCAATCCCTTCGACTTCATGGACAACATCTCGCTGTCC 2859480 Query 53023 GGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||| || ||||| ||||||| ||||| || || ||| Sbjct 2859479 GGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTAC 2859441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063795373600