Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 1e-15
>seq2
Length=4789688
Score = 98.7 bits (108), Expect = 1e-15
Identities = 338/519 (65%), Gaps = 15/519 (3%)
Strand=Plus/Minus
Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608
||||| || | ||||| |||| ||| ||||| | || ||||| | || | | ||
Sbjct 2859950 GTTCCTTGCATCCGCAAGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGTCC 2859891
Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668
|| ||||| | ||||| || || || || ||||| || | || || || ||
Sbjct 2859890 ACCTTTGCTCAGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCC 2859831
Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727
||||| | || || | | || || | ||| | | ||||| || ||||| || |||
Sbjct 2859830 TTTGCTTCGATCTTCTGGCTGAAGAAGCGTGGTC-TGATGCCTGGTCTCACCTTCTCCAA 2859772
Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATTATAATA 52786
|||| |||| || || || || || ||||||| || ||||| ||| || | || | |
Sbjct 2859771 CGAGCTGATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCCCA 2859712
Query 52787 CGCGCGTTAAAGAAAAATTGTCATATGAAAAA-ATTCT--AGA-CATGTTTAAAGAGGCC 52842
| | | || | | | || || | ||| | ||| ||| | | || |||
Sbjct 2859711 C-CTC-------AACCACCGCCCTAGCAAGGAGATTGTCCAGAACATCATCACCGACGCC 2859660
Query 52843 GTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC 52902
|||| || || | ||||| | ||||| ||| | ||||| || | |||||||||
Sbjct 2859659 GTCGCGATCGAGCAGGAGTTCCTGACGGATGCTCTGCCCGTCAACCTGCTTGGCATGAAC 2859600
Query 52903 GCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGT 52962
|| | | |||||| ||||||||||||| || || ||| |||| | || || ||
Sbjct 2859599 GCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGACTTCTCGTGGCTCTTGGC 2859540
Query 52963 CAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAG 53022
| ||| ||||| || || || ||||| || ||| ||||||| |||||
Sbjct 2859539 AACAAGAAGTACTACAACGCCACCAATCCCTTCGACTTCATGGACAACATCTCGCTGTCC 2859480
Query 53023 GGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061
||||| || ||||| ||||||| ||||| || || |||
Sbjct 2859479 GGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTAC 2859441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063795373600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |