Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 183 4e-41 seq2 131 2e-25 >seq1 Length=6618042 Score = 183 bits (202), Expect = 4e-41 Identities = 582/896 (65%), Gaps = 6/896 (1%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 |||||||| || || | ||||| | | |||||| |||| || || | || | | Sbjct 2615611 TCGAACTCCTCGCCGTACACATCAGCGAGGCCAGGAGCCTCGTTGGGGCAGAACAGTGTC 2615670 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || || || | ||| || || ||||| ||||| || ||| |||| ||||| || Sbjct 2615671 CAGTCACCGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGAGTCCAGAGAGCGTAGAAG 2615730 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 ||||| | | |||| || || || || ||||| |||||| | ||| | | Sbjct 2615731 AGATCACGAGCTCTAACTTCTTCCTTGCCGTGGTTCTTGCGAAGATCCAAGAAGTCGAAG 2615790 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 |||||||| ||||| || |||| ||| || || | | | || || || |||||||||||| Sbjct 2615791 ATATCAGAGTGCCAAGGCTCCAGGTAGATAGCGAAAGCACCAGGGCGCTTGTTTCCTCCC 2615850 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 || || | |||||| || ||||| || | || | | ||| || | ||| || ||||| Sbjct 2615851 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATGGGGACAATTCCGTTGGAA 2615910 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 80220 | |||||||| || ||||| ||| || |||| || ||| || ||||| Sbjct 2615911 GATCCATTGGTACCAGAGATGTAGGAGCCGGTGGCGCGGATACGGTGGATGTTGAGACCA 2615970 Query 80221 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 80280 || || || || | || ||||| | || || || | || || || || ||||| Sbjct 2615971 ATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAGTGTCGTAAATACCCTCA 2616030 Query 80281 ATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 80340 ||||| || || |||||| | || || ||| | | || | || ||| || Sbjct 2616031 ATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCTGCGGCTGAGGAGTACCG 2616090 Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 || || || | ||| |||||||| || || || | || | |||| || ||||||||| Sbjct 2616091 GCGTTGAACAGGGTTGGAGAAGCATGAGTGAAGTACTTCTGGGACATCAGGTTGTACGTC 2616150 Query 80401 TCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 ||||| | || || || || | || ||||| || || |||||||| | |||||| Sbjct 2616151 TCAATGACCTTCTCAATGTCATCACCG-TGGATTCCAACAGCAACACGCATAATCATGTG 2616209 Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519 ||| || | ||| | | |||| ||| || | |||||| || |||| || || Sbjct 2616210 CTGGGGACGTTCCGCAACCTTGCCATTGATCCGAAGCAAGTATGAGCGCTCCAGGGTCTT 2616269 Query 80520 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 80579 || || ||||| | || ||||| || || || | || | ||||| | || || Sbjct 2616270 GAATCCGAAATATTGATAGTTGAAGTCACGGTCATACACGATGGCGGAGTTCAATTCGTC 2616329 Query 80580 CTTATATTTGTTAACTACATC-CATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCA 80637 | || ||| |||| || || ||| | | ||| || || ||||||| | | || Sbjct 2616330 CGCATGTTTCATAACGACCTCATATGTT--TCCTTCGATATCATCGGAGCGGGCTGGCCG 2616387 Query 80638 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 80697 || || || || ||||||| | | | || || || ||| | || || || Sbjct 2616388 TTCTTCGGGTTGACATAGTGGTACAGGTCTGAGATAACCAGGGAAAACTGCTTCTTCGTC 2616447 Query 80698 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 | |||||| || || || |||||||| | || || | || ||||| ||||| || Sbjct 2616448 TGCTTGTGCAGGTTCGACACGGCTATACGCGCAGCGAGGATTGCATAGTCTGGGTG 2616503 >seq2 Length=4789688 Score = 131 bits (144), Expect = 2e-25 Identities = 160/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || ||| || || ||| |||||||||||| || | | || || |||||||| Sbjct 2859718 AACAGCAGACAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAG 2859777 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || ||||| || ||||| || |||||||| || ||||| || || || ||||| || || Sbjct 2859778 AAGGTGAGACCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCG 2859837 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127 || |||||||| || || || ||||| |||||||| || | || || | ||| | Sbjct 2859838 GAGAAGAAGATGCCCTCCACAGCGGCGAAGGCAACGAGACGCTGAGCAAAGGTGGACTCC 2859897 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 |||| || |||||||| ||||| || |||||||| Sbjct 2859898 TTGTCCTGAATCCACTTGATGGCCCACTCAGCCTTCTT 2859935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268503714120