Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 170 3e-37 seq2 116 5e-21 >seq1 Length=6618042 Score = 170 bits (188), Expect = 3e-37 Identities = 561/866 (65%), Gaps = 6/866 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 |||||| || || || || | || || ||| || || | | | || || ||||| Sbjct 2615641 CCAGGAGCCTCGTTGGGGCAGAACAGTGTCCAGTCACCGTTCGCCTCGACACGCTTCATG 2615700 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||| || ||| |||| ||||| || ||||| | | |||| || || || || Sbjct 2615701 AAGAGGTCCGGAGTCCAGAGAGCGTAGAAGAGATCACGAGCTCTAACTTCTTCCTTGCCG 2615760 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| |||||| | ||| | | |||||||| ||||| || |||| ||| || Sbjct 2615761 TGGTTCTTGCGAAGATCCAAGAAGTCGAAGATATCAGAGTGCCAAGGCTCCAGGTAGATA 2615820 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || |||||||||||||| || | |||||| || ||||| || | Sbjct 2615821 GCGAAAGCACCAGGGCGCTTGTTTCCTCCCTGGTCGACGTATCTGGCAGTGTTGTTGAAG 2615880 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | ||| || ||||| | |||||||| || ||||| ||| || Sbjct 2615881 ACCCGGAGCATGGGGACAATTCCGTTGGAAGATCCATTGGTACCAGAGATGTAGGAGCCG 2615940 Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 |||| || ||| | || ||||| || || || || | || ||||| | || Sbjct 2615941 GTGGCGCGGATACGGTGGATGTTGAGACCAATACCACCAGCGGTCTTTGAGATCAGCGCA 2616000 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 || || | || || || || ||||| || || || ||| |||||| | || || Sbjct 2616001 CAAGTCTTGAGAGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCGACGAGGAAG 2616060 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 ||| | | || | || ||| || || || || | ||| |||||||| || || Sbjct 2616061 CAGGAGGCGAGCTGCGGCTGAGGAGTACCGGCGTTGAACAGGGTTGGAGAAGCATGAGTG 2616120 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATG 72512 || | || | |||| || |||||||||||||| | || || || || | || Sbjct 2616121 AAGTACTTCTGGGACATCAGGTTGTACGTCTCAATGACCTTCTCAATGTCATCACCG-TG 2616179 Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT 72572 ||||| || || |||||||| | ||| ||||| || | ||| | | |||| ||| || Sbjct 2616180 GATTCCAACAGCAACACGCATAATCATGTGCTGGGGACGTTCCGCAACCTTGCCATTGAT 2616239 Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 72632 | |||||| || |||| || || || || ||||| | || ||||| || Sbjct 2616240 CCGAAGCAAGTATGAGCGCTCCAGGGTCTTGAATCCGAAATATTGATAGTTGAAGTCACG 2616299 Query 72633 TTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGA 72691 || || | || | || || | || ||| || ||| |||| | || ||| | Sbjct 2616300 GTCATACACGATGGCGGAGTTCAATTCGTCCGCATGTTTCATAACGACCTCATATGTT-- 2616357 Query 72692 TACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCC 72750 | ||| || || ||||||| | | || || || || || ||||||| | | | || Sbjct 2616358 TCCTTCGATATCATCGGAGCGGGCTGGCCGTTCTTCGGGTTGACATAGTGGTACAGGTCT 2616417 Query 72751 TCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTG 72810 || || ||| | || || || | |||||| || || || |||||||| | Sbjct 2616418 GAGATAACCAGGGAAAACTGCTTCTTCGTCTGCTTGTGCAGGTTCGACACGGCTATACGC 2616477 Query 72811 GCGGCTAGAATGGCATAATCTGGATG 72836 || || || || ||||| ||||| || Sbjct 2616478 GCAGCGAGGATTGCATAGTCTGGGTG 2616503 Score = 96.9 bits (106), Expect = 5e-15 Identities = 198/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||||| ||||||||||| |||| ||| || || | ||||| || ||||||||| Sbjct 2614396 TCCTGGTCCACAGTAAACTGAATTGGAGCGGAGGCAGCCATAGTACGAAGGTAGTACATG 2614455 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || || || ||||| | |||| || || ||||| || || | ||| |||| | Sbjct 2614456 CCAGTCTTCAGACCCATCTTCCACCCAGCGAAGTGCATGCTGGTAATCTTGCCCATAG-T 2614514 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 ||| || |||||||| || | |||||| || |||||||| || || | ||| || Sbjct 2614515 AGGCTCCTTCATGTGAATGTTGAGAGACTGAGACTGGTCGATGAACGCACCACGGTCAGC 2614574 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 |||||| | | ||| || | || ||||| | || || || | ||| || Sbjct 2614575 AGCCATCTGAAGGATATGGCGCTGCGAGATCTCCCACACTGTCTTGTAGAGGGCCTTGAT 2614634 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 ||| | || | ||| | | |||||||| || ||||| || ||||| || Sbjct 2614635 GTCTGCAGGGATGTTGGGAATGTTCTGAATAGAACCACCTTCGGCAATGAT 2614685 >seq2 Length=4789688 Score = 116 bits (128), Expect = 5e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || ||| || || ||| ||||||||||||||| | | || | |||||||| Sbjct 2859718 AACAGCAGACAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAG 2859777 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || ||||| || ||||| || |||||||| || ||||| || || || ||||| || || Sbjct 2859778 AAGGTGAGACCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCG 2859837 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 || |||||||| || || || || || ||||||| || | || || | || | Sbjct 2859838 GAGAAGAAGATGCCCTCCACAGCGGCGAAGGCAACGAGACGCTGAGCAAAGGTGGACTCC 2859897 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 |||| || |||||||| ||||| || |||||||| Sbjct 2859898 TTGTCCTGAATCCACTTGATGGCCCACTCAGCCTTCTT 2859935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138923155080