Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1 170 3e-37
seq2 116 5e-21
>seq1
Length=6618042
Score = 170 bits (188), Expect = 3e-37
Identities = 561/866 (65%), Gaps = 6/866 (1%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
|||||| || || || || | || || ||| || || | | | || || |||||
Sbjct 2615641 CCAGGAGCCTCGTTGGGGCAGAACAGTGTCCAGTCACCGTTCGCCTCGACACGCTTCATG 2615700
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
||||| || ||| |||| ||||| || ||||| | | |||| || || || ||
Sbjct 2615701 AAGAGGTCCGGAGTCCAGAGAGCGTAGAAGAGATCACGAGCTCTAACTTCTTCCTTGCCG 2615760
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| |||||| | ||| | | |||||||| ||||| || |||| ||| ||
Sbjct 2615761 TGGTTCTTGCGAAGATCCAAGAAGTCGAAGATATCAGAGTGCCAAGGCTCCAGGTAGATA 2615820
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | | || || || |||||||||||||| || | |||||| || ||||| || |
Sbjct 2615821 GCGAAAGCACCAGGGCGCTTGTTTCCTCCCTGGTCGACGTATCTGGCAGTGTTGTTGAAG 2615880
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | | ||| || | ||| || ||||| | |||||||| || ||||| ||| ||
Sbjct 2615881 ACCCGGAGCATGGGGACAATTCCGTTGGAAGATCCATTGGTACCAGAGATGTAGGAGCCG 2615940
Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333
|||| || ||| | || ||||| || || || || | || ||||| | ||
Sbjct 2615941 GTGGCGCGGATACGGTGGATGTTGAGACCAATACCACCAGCGGTCTTTGAGATCAGCGCA 2616000
Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393
|| || | || || || || ||||| || || || ||| |||||| | || ||
Sbjct 2616001 CAAGTCTTGAGAGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCGACGAGGAAG 2616060
Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453
||| | | || | || ||| || || || || | ||| |||||||| || ||
Sbjct 2616061 CAGGAGGCGAGCTGCGGCTGAGGAGTACCGGCGTTGAACAGGGTTGGAGAAGCATGAGTG 2616120
Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATG 72512
|| | || | |||| || |||||||||||||| | || || || || | ||
Sbjct 2616121 AAGTACTTCTGGGACATCAGGTTGTACGTCTCAATGACCTTCTCAATGTCATCACCG-TG 2616179
Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT 72572
||||| || || |||||||| | ||| ||||| || | ||| | | |||| ||| ||
Sbjct 2616180 GATTCCAACAGCAACACGCATAATCATGTGCTGGGGACGTTCCGCAACCTTGCCATTGAT 2616239
Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 72632
| |||||| || |||| || || || || ||||| | || ||||| ||
Sbjct 2616240 CCGAAGCAAGTATGAGCGCTCCAGGGTCTTGAATCCGAAATATTGATAGTTGAAGTCACG 2616299
Query 72633 TTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGA 72691
|| || | || | || || | || ||| || ||| |||| | || ||| |
Sbjct 2616300 GTCATACACGATGGCGGAGTTCAATTCGTCCGCATGTTTCATAACGACCTCATATGTT-- 2616357
Query 72692 TACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCC 72750
| ||| || || ||||||| | | || || || || || ||||||| | | | ||
Sbjct 2616358 TCCTTCGATATCATCGGAGCGGGCTGGCCGTTCTTCGGGTTGACATAGTGGTACAGGTCT 2616417
Query 72751 TCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTG 72810
|| || ||| | || || || | |||||| || || || |||||||| |
Sbjct 2616418 GAGATAACCAGGGAAAACTGCTTCTTCGTCTGCTTGTGCAGGTTCGACACGGCTATACGC 2616477
Query 72811 GCGGCTAGAATGGCATAATCTGGATG 72836
|| || || || ||||| ||||| ||
Sbjct 2616478 GCAGCGAGGATTGCATAGTCTGGGTG 2616503
Score = 96.9 bits (106), Expect = 5e-15
Identities = 198/291 (68%), Gaps = 5/291 (2%)
Strand=Plus/Plus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||||| ||||||||||| |||| ||| || || | ||||| || |||||||||
Sbjct 2614396 TCCTGGTCCACAGTAAACTGAATTGGAGCGGAGGCAGCCATAGTACGAAGGTAGTACATG 2614455
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907
|| || || ||||| | |||| || || ||||| || || | ||| |||| |
Sbjct 2614456 CCAGTCTTCAGACCCATCTTCCACCCAGCGAAGTGCATGCTGGTAATCTTGCCCATAG-T 2614514
Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967
||| || |||||||| || | |||||| || |||||||| || || | ||| ||
Sbjct 2614515 AGGCTCCTTCATGTGAATGTTGAGAGACTGAGACTGGTCGATGAACGCACCACGGTCAGC 2614574
Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027
|||||| | | ||| || | || ||||| | || || || | ||| ||
Sbjct 2614575 AGCCATCTGAAGGATATGGCGCTGCGAGATCTCCCACACTGTCTTGTAGAGGGCCTTGAT 2614634
Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075
||| | || | ||| | | |||||||| || ||||| || ||||| ||
Sbjct 2614635 GTCTGCAGGGATGTTGGGAATGTTCTGAATAGAACCACCTTCGGCAATGAT 2614685
>seq2
Length=4789688
Score = 116 bits (128), Expect = 5e-21
Identities = 157/218 (72%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115
|||| || ||| || || ||| ||||||||||||||| | | || | ||||||||
Sbjct 2859718 AACAGCAGACAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAG 2859777
Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175
|| ||||| || ||||| || |||||||| || ||||| || || || ||||| || ||
Sbjct 2859778 AAGGTGAGACCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCG 2859837
Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232
|| |||||||| || || || || || ||||||| || | || || | || |
Sbjct 2859838 GAGAAGAAGATGCCCTCCACAGCGGCGAAGGCAACGAGACGCTGAGCAAAGGTGGACTCC 2859897
Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270
|||| || |||||||| ||||| || ||||||||
Sbjct 2859898 TTGTCCTGAATCCACTTGATGGCCCACTCAGCCTTCTT 2859935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138923155080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |