Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 >seq2 Length=4789688 Score = 181 bits (200), Expect = 2e-40 Identities = 365/538 (68%), Gaps = 25/538 (5%) Strand=Plus/Minus Query 125322 AAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGG 125381 ||||||||||| ||||| ||| | || || | || || || |||||| | ||| Sbjct 2859972 AAACACATGCT----AACGCG-TCG---CAGTTCCTTGCATCCGCAAGAAGGCTGAGTGG 2859921 Query 125382 GTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCC 125441 | || |||||| | ||| | |||| | | || | | || || || |||||| Sbjct 2859920 GCCATCAAGTGGATTCAGGACAAGGAGTCCACCTTTGCTCAGCGTCTCGTTGCCTTCGCC 2859861 Query 125442 GCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGC 125501 || || |||||||||||||| || || ||||| | ||||| ||||| |||||||| Sbjct 2859860 GCTGTGGAGGGCATCTTCTTCTCCGGCTCCTTTGCTTCGATCTTCTGGCTGAAGAAGCGT 2859801 Query 125502 GGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACAC 125561 || || ||||| || || || | |||||| | || ||||| || ||||| || ||| Sbjct 2859800 GGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTGCAC 2859741 Query 125562 TGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGA 125620 |||||||| ||| ||||| || || || | | | | | ||| | Sbjct 2859740 ACCGACTTTGCTTGTCTGCTGTTCTCCCACCT----------CAACCACCGCCCTAGCAA 2859691 Query 125621 TGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGA 125680 || | ||| ||||| | ||||| ||||| ||| || || ||||| || || || Sbjct 2859690 GGAGATTGTCCAGAACATCATCACCGACGCCGTCGCGATCGAGCAGGAGTTCCTGACGGA 2859631 Query 125681 ATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTT 125740 | || || |||| | || ||||||||||| |||||| |||||| ||||||| ||||| Sbjct 2859630 TGCTCTGCCCGTCAACCTGCTTGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTT 2859571 Query 125741 TGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGAA 125797 || || || || || || || | ||||| ||||| |||||||||| || Sbjct 2859570 CGTCGCTGACCGACTTCT---CGTGGCTCTTGGCAACAAGAAGTACTACAACGCCACCAA 2859514 Query 125798 TCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 |||||| || |||||| || ||| || || || ||||||||||| ||||||||| Sbjct 2859513 TCCCTTCGACTTCATGGACAACATCTCGCTGTCCGGCAAGACCAACTTCTTCGAGAAG 2859456 Score = 136 bits (150), Expect = 6e-27 Identities = 207/290 (71%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||||||||| ||||| | || ||| | || ||| Sbjct 2860335 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGACCTG 2860276 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | || ||| || |||||| | || || || Sbjct 2860275 TCCAAGGACCTTCACGACTGGAACAACCGCCTGAACGATGATGAGCGCTACTTCATCTCC 2860216 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| ||||| |||||||||||||| || ||| || || Sbjct 2860215 CACGTCCTCGCCTTCTTCGCCGCGTCCGACGGAATCGTCAACGAAAACCTGGTGGAGCGC 2860156 Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 ||| ||| | ||| | || |||| ||| ||||| || || ||||| |||||| Sbjct 2860155 TTCAGCGGGGAG--GTCCAGGTCCCCGAGG-CTCGTTGCTTCTATGGTTTCCAGATCATG 2860099 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||| | ||||| || | ||||| || ||||||| ||||| Sbjct 2860098 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACAT 2860049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058894313080