Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 183 4e-41 seq2 116 5e-21 >seq1 Length=6618042 Score = 183 bits (202), Expect = 4e-41 Identities = 582/896 (65%), Gaps = 6/896 (1%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| || || | |||| | | |||||| || | || || | || | | Sbjct 2615611 TCGAACTCCTCGCCGTACACATCAGCGAGGCCAGGAGCCTCGTTGGGGCAGAACAGTGTC 2615670 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || || |||| ||| || || ||||| ||||| || ||| |||| ||||| || Sbjct 2615671 CAGTCACCGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGAGTCCAGAGAGCGTAGAAG 2615730 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | | |||| ||| || || || ||||| |||||| | ||| | | Sbjct 2615731 AGATCACGAGCTCTAACTTCTTCCTTGCCGTGGTTCTTGCGAAGATCCAAGAAGTCGAAG 2615790 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 |||||||| ||||| || |||| ||| || || | | | ||||| || |||||||||||| Sbjct 2615791 ATATCAGAGTGCCAAGGCTCCAGGTAGATAGCGAAAGCACCAGGGCGCTTGTTTCCTCCC 2615850 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | |||||| || ||||| || | || | | ||| || | ||| ||||| || Sbjct 2615851 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATGGGGACAATTCCGTTGGAA 2615910 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 ||||||||||| ||||| ||| || |||| || ||| || ||||| Sbjct 2615911 GATCCATTGGTACCAGAGATGTAGGAGCCGGTGGCGCGGATACGGTGGATGTTGAGACCA 2615970 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 || || || || | || ||||| | || || || | ||||| || |||||||| Sbjct 2615971 ATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAGTGTCGTAAATACCCTCA 2616030 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 ||||| || || |||||| | || || ||| | | || | || ||| || Sbjct 2616031 ATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCTGCGGCTGAGGAGTACCG 2616090 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 || || || | ||| |||||||| || || || | || | || | || ||||||||| Sbjct 2616091 GCGTTGAACAGGGTTGGAGAAGCATGAGTGAAGTACTTCTGGGACATCAGGTTGTACGTC 2616150 Query 63678 TCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 ||||| | || || || || | || ||||| || || |||||||| | |||||| Sbjct 2616151 TCAATGACCTTCTCAATGTCATCACCG-TGGATTCCAACAGCAACACGCATAATCATGTG 2616209 Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796 ||| || | ||| | | |||| || || | |||||| || |||| || || Sbjct 2616210 CTGGGGACGTTCCGCAACCTTGCCATTGATCCGAAGCAAGTATGAGCGCTCCAGGGTCTT 2616269 Query 63797 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63856 || || ||||| | || ||||| || || || | || | ||||| | || || Sbjct 2616270 GAATCCGAAATATTGATAGTTGAAGTCACGGTCATACACGATGGCGGAGTTCAATTCGTC 2616329 Query 63857 CTTATATTTGTTAACTATATC-CATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCA 63914 | || ||| |||| | || ||| | | ||| || || ||||||| | | || Sbjct 2616330 CGCATGTTTCATAACGACCTCATATGTT--TCCTTCGATATCATCGGAGCGGGCTGGCCG 2616387 Query 63915 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 63974 || || || || ||||||| | | | || || || ||| | || || || Sbjct 2616388 TTCTTCGGGTTGACATAGTGGTACAGGTCTGAGATAACCAGGGAAAACTGCTTCTTCGTC 2616447 Query 63975 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 | |||||| || || || |||||||| | || || || || ||||| || || || Sbjct 2616448 TGCTTGTGCAGGTTCGACACGGCTATACGCGCAGCGAGGATTGCATAGTCTGGGTG 2616503 >seq2 Length=4789688 Score = 116 bits (128), Expect = 5e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || ||| || || ||| |||||||||||| || | | || || |||||||| Sbjct 2859718 AACAGCAGACAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAG 2859777 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || ||||| || ||||| || |||||||| || ||||| || || ||||| || || || Sbjct 2859778 AAGGTGAGACCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCG 2859837 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33471 || |||||||| || || || || || ||||||| || | || || | || | Sbjct 2859838 GAGAAGAAGATGCCCTCCACAGCGGCGAAGGCAACGAGACGCTGAGCAAAGGTGGACTCC 2859897 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||| || |||||||| ||||| || |||||||| Sbjct 2859898 TTGTCCTGAATCCACTTGATGGCCCACTCAGCCTTCTT 2859935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946943034280