Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 104 5e-17 seq1 95.1 2e-14 seq3 89.7 1e-12 >seq2 Length=4789688 Score = 104 bits (114), Expect = 5e-17 Identities = 288/435 (66%), Gaps = 14/435 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| ||| ||||| ||||||||||||||||| || ||| Sbjct 2859460 TCGAAGAAGTTGGTCTTGCCGGACAGCGAGATGTTGTCCATGAAGTCGAAGGGATTGGTG 2859519 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| | ||| | |||||| || |||| | ||||| || || ||||| | Sbjct 2859520 GCGTTGTAGTACTTCTTGTTGCCAAGAGCCACGAGAAGTCGGTCAGCGACGAACTCGATG 2859579 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | ||||||||||| || ||| || | || || | Sbjct 2859580 TACTGGCACATGAGCTTGGCGTTCATGCCAAGCAGGTTGAC-GGGCAGAGCATCCGTCAG 2859638 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT----TG--CCTTCACCTGTGCCAG 251795 ||| |||| ||| | || || || || | || || | || ||| ||| || Sbjct 2859639 GAACTCCTGCTCGATCGCGACGGCGTCGGTGATGATGTTCTGGACAATCTCCT-TGCTAG 2859697 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 | | | ||| || | ||| |||| || |||| | |||||||||||| Sbjct 2859698 GG--CGGTGGTT---GAGGTGGGAGAACAGCAGACAAGCAAAGTCGGTGTGCAGACCCTC 2859752 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||| | ||||||||| | || |||||||||| ||||| ||| | || Sbjct 2859753 ATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCACGCTTCTTCAG 2859812 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | |||||| || ||||| | | ||||| ||| | | ||||| Sbjct 2859813 CCAGAAGATCGAAGCAAAGGAGCCGGAGAAGAAGATGCCCTCCACAGCGGCGAAGGCAAC 2859872 Query 251976 AAGGCGCTCAGCAAA 251990 || |||| |||||| Sbjct 2859873 GAGACGCTGAGCAAA 2859887 >seq1 Length=6618042 Score = 95.1 bits (104), Expect = 2e-14 Identities = 429/668 (64%), Gaps = 33/668 (5%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 |||||||| ||||||||||||||||||||||| || | || ||| | | | || Sbjct 1001581 TCTCTGTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGTGTTCGAGAACCCC 1001522 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 || | || ||||||| ||||| ||||||||| ||||| || ||||| |||||||| Sbjct 1001521 GACATTCTGTTGCTTGACGAGCCGACCAACCACTTGGACGTCAAGAACGTTGCCTGGCTG 1001462 Query 279822 GTGTCCTACCT-AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGG 279880 | | ||||| | | | ||| | ||||| |||| ||||| |||||| Sbjct 1001461 GAGCAGTACCTCATCAACTCT----CCTTGCACTTCCATCATCGTCTCCCACGACAGCAA 1001406 Query 279881 CTTCCTAGATGCCGTGTGCTCTGC-CATCATTCACTATGAGC---AAAATCTGAAGCTCT 279936 ||||| || ||| | | || | |||| ||||| |||| || || |||| | Sbjct 1001405 GTTCCTGGACAACGTCATC-CAGCACGTCATCCACTACGAGCGCTTCAAGCTTAAGCGTT 1001347 Query 279937 CCAAGCACATCGGCAACCTGTCTGCTTTCGT-GGCAAAGCGCCCTGAGGCGGCCGCCTAC 279995 || ||| ||| | ||||| |||| |||| || | ||||| Sbjct 1001346 ------ACCGTGGCTCTCTGAGCGAGTTCGTCAAGAAAGTCCCCT-CTGCTCGCTCCTAC 1001294 Query 279996 TATGACCTGAAGGACGCCACCGCCA---AGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 || || || || ||| ||| || ||| | ||||| ||||| || || |||||| Sbjct 1001293 TACGAGCT---GGGTGCCTCCGACATGGAGTTCAAGTTCCCCGAGCCCGGTTTCCTGGAG 1001237 Query 280053 GGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCC 280112 || ||| | |||| || ||| | || | | |||| || ||| Sbjct 1001236 GGTGTCAAGACCAAGGCCAAGGCCATCGTCCGTGTCACCAACATGACCTTCCAGTACCCC 1001177 Query 280113 AATGGCCCCAA-CATC--TTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATT 280169 | |||||| | || ||| |||| || ||| ||| || ||| || || Sbjct 1001176 GGTACCCCCAAGCCTCAGCTCACGGACGTCACCTTCCAGTGCTCTCTGGGCTCCCGTATC 1001117 Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 | |||||| || ||||| ||||| |||||||| ||||| | || |||||||| || ||| Sbjct 1001116 GCTGTCATCGGTCCCAACGGTGCTGGTAAGTCCACCCTGGTGAACGTCCTGACCGGTGAG 1001057 Query 280230 ACCCAGG---CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 | || |||| |||| || | | || ||||| || || || ||| || Sbjct 1001056 ---CTGGTCCCCACCAAGGGTGAGGTCTACCACCACGAGAACATCCGTATCGCCTACATC 1001000 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 ||||| |||||| ||||||||| ||||||||||||| ||||||| | ||||| Sbjct 1000999 AAGCAGCATGCTTTCGCCCACATCGATAACCACCTGGACAAGACTCCTTCTGAGTACATC 1000940 Query 280347 CAGTGGCG 280354 |||||||| Sbjct 1000939 CAGTGGCG 1000932 Score = 86.0 bits (94), Expect = 1e-11 Identities = 182/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173 ||| | ||| |||| || |||||||| |||||||| | | || | || | | | Sbjct 2614542 CTGAGACTGGTCGATGAACGCACCACGGTCAGCAGCCATCTGAAGGATATGGCG-CTGCG 2614600 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233 ||||||||||| ||||||||| | ||||||| || | | | ||| || |||| Sbjct 2614601 AGATCTCCCACACTGTCTTGTAGAGGGCCTTGATGTCTGCAGGGATGTTGGGAATGTTCT 2614660 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAG 293293 | ||||| || || | |||||| || |||||||||| | || ||||| ||| | Sbjct 2614661 GAATAGAACCACCTTCGGCAATGATACGGTTCTTCATGTTGTCAGACCAGAGGCCAAGGT 2614720 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | || || || || | | ||||||||| ||||||| || || ||| |||| Sbjct 2614721 CGACAAGATCCTTGAGCAGCCAGGGGTTGACAACTTGGAACTCGCCGGCAAGAACACGAC 2614780 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCG 293382 || || |||||||| ||| ||| ||| Sbjct 2614781 GGGAATAGATGTTCGAGGTGTAGGGCTCG 2614809 >seq3 Length=4355815 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| |||||||| || ||||||||||||||||||||||| || | ||||| || || Sbjct 661310 AGTCGGTTCTCTCTCTGGTGGTTGGAAGATGAAGCTGGCGCTGGCCCGCGCAATGCTCAA 661251 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | || ||||| || || ||||| || || ||||||||| ||||| | | ||||| Sbjct 661250 GAAGGCTGATGTTCTGCTTCTTGACGAACCTACCAACCACTTGGACGTCGCAAACGT 661194 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 280718 CGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCC 280777 ||||||||||||||| |||||||| || ||||| | | | || ||||| | |||| Sbjct 660213 CGGTCTTTCTGGAGGTCAGAAGGTGAAGGTTGTCCTTGCCGGTGCCATGTGGAACAACCC 660154 Query 280778 TCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 |||| || | || ||||||||||| ||||||| |||||||||| Sbjct 660153 TCACTTGCTGGTCCTCGACGAGCCGACCAACTTCTTGGACCGCGA 660109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836365417753