Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7 158 2e-33 seq3 129 1e-24 seq2 123 5e-23 >seq7 Length=1958609 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || ||||| | || | ||| || || ||||| || || || || || || | Sbjct 430708 TTCCTCCACGCAGGCGGAGGACAAGGTGCAGTGTAGACTCCTTCTGAATATTGTAGTCTG 430767 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | ||||| || | |||||| || ||||| || || | || ||||| || | Sbjct 430768 ACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCCGGGG 430827 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || |||||||| || || || | ||| ||| |||||||| |||| ||||| | Sbjct 430828 GAATACCCTCCTTGTCCTGGATTTTCGACTTCACGTTATCGATGGTATCTGACGATTCGA 430887 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct 430888 CTTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCATT 430937 Score = 150 bits (166), Expect = 3e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || |||| || | ||| || ||| ||| || ||||||||||| |||| Sbjct 430936 TTCCACCACGCAGACGCAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGG 430995 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||| || | |||||| || ||||| || || | || ||||| || | Sbjct 430996 AAAGGGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGG 431055 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCT 68411 | || || |||||||| || ||||| | ||||||| ||||||||||| ||| || || Sbjct 431056 GGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTC-GCTCGACTCC 431114 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || |||| |||||| || || || |||||||||||||||| Sbjct 431115 ACCTCCAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 431154 Score = 125 bits (138), Expect = 1e-23 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||| ||| || |||||||| || ||||||||||| |||| Sbjct 431221 TTCCACCACGGAGACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGG 431280 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || || || | |||||| || ||||| || | | || ||||| || | Sbjct 431281 AGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGG 431340 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCT 68411 | || || |||||||| || ||||| | ||||||| ||||||||||| ||| || || Sbjct 431341 GGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTC-GCTCGACTCC 431399 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || | |||||| || || || || Sbjct 431400 ACCTCAAGGGTGATAGTCTTGCCGGT 431425 >seq3 Length=4355815 Score = 129 bits (142), Expect = 1e-24 Identities = 138/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||| || || | ||||| || | |||||| || ||||| || Sbjct 2043493 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATA 2043552 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || || || || |||||||| |||||||| ||||||||| ||| Sbjct 2043553 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCG 2043612 Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| ||| || || || || | ||| ||||| || ||||| |||||||||||||| Sbjct 2043613 ATGGTGTC-GCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 2043671 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 |||||| |||||| |||||||| |||||| ||||||||||| |||||||| | || Sbjct 661184 GAGCCACTTCACGTTTGCGACGTCCAAGTGGTTGGTAGGTTCGTCAAGAAGCAGAACATC 661243 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 ||| | |||| || ||||| | || | ||||||||| ||||| || || || || || Sbjct 661244 AGCCTTCTTGAGCATTGCGCGGGCCAGCGCCAGCTTCATCTTCCAACCACCAGAGAGAGA 661303 Query 225634 GCCGA 225638 |||| Sbjct 661304 ACCGA 661308 >seq2 Length=4789688 Score = 123 bits (136), Expect = 5e-23 Identities = 312/470 (66%), Gaps = 6/470 (1%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| |||||| Sbjct 2859423 CATGACACCGGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGGA 2859482 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| ||||||||||| ||||| || |||| | | ||| || || Sbjct 2859483 CAGCGAGATGTTGTCCATGAAGTCGAAGGGATTGGTGGCGTTGTAGTACTTCTTGTTGCC 2859542 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || || || |||||||| ||||||||||||||||||| ||| || | | ||| Sbjct 2859543 AAGAGCCACGAGAAGTCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTT 2859602 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||||| || | | ||| | || || | ||| |||| ||| | ||||| || Sbjct 2859603 CATGCCAAGCAGGTTGACGGGCAGAGCATCCGTCAGGAACTCCTGCTCGATCGCGACGGC 2859662 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234 || || |||| ||| || | || | | || | ||| | || |||| Sbjct 2859663 GTCGGTGATGATGTTCTGGACAATCTCCTTGCTAGGGCGGTGGTTGAGGTGGGAGAACAG 2859722 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 || |||| | ||| || ||||| || || ||| | ||||||||| || Sbjct 2859723 CAGACAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGT 2859782 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAAT-GGCGCAGAACGACCCGGAGA 10353 ||||| ||||| || || || || ||||||||| || | ||| || || ||||||| Sbjct 2859783 GAGACCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCA-AAGGAGCCGGAGA 2859841 Query 10354 ACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 |||||| |||||||| | |||| ||||| |||| || |||| Sbjct 2859842 --AGAAGATGCCCTCCACAGCGGCGAAGGCAACGAGACGCTGAGCAAAGG 2859889 Score = 95.1 bits (104), Expect = 2e-14 Identities = 187/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 10515 TCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAG 10574 |||| |||||||||||| |||| ||||| | |||| | |||| || | ||| Sbjct 2860058 TCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAG 2860117 Query 10575 AACATACGTGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATC 10634 || ||| ||| |||| || ||| ||| || ||| | |||||| || | Sbjct 2860118 AAGCAACGAGCCTCGGGGACCTGGACCTCCCCGCTGAAGCGCTCCACCAGGTTTTCGTTG 2860177 Query 10635 ACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCA 10694 || || || ||| | || |||||| |||||| ||| |||||||| |||||||||| Sbjct 2860178 ACGATTCCGTCGGACGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTAGCGCTCATCA 2860237 Query 10695 TCGTTCA----GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCAC 10750 ||||||| ||| || |||||| | |||| | || | | |||||| | Sbjct 2860238 TCGTTCAGGCGGTTGTT----CCAGTCGTGAAGGTCCTTGGACAGGTCAATCTCCTCTGC 2860293 Query 10751 GGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 |||||||| | ||| ||||||||||||||||||| Sbjct 2860294 AGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTG 2860329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622019830760