Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 309 6e-79 seq1 181 2e-40 >seq2 Length=4789688 Score = 309 bits (342), Expect = 6e-79 Identities = 614/908 (68%), Gaps = 72/908 (8%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||| || ||||||||||||||| Sbjct 2860335 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGACCTG 2860276 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAG---TTTTTCCTCAA 42415 |||||||| || |||| | || | |||| | || || | ||| || Sbjct 2860275 TCCAAGGACCTTCACGACTGGAACA-ACCGCCTGAACGATGATGAGCGCTACTTCATCTC 2860217 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | || |||||||||||||| || ||||| || ||||| || ||||||| | Sbjct 2860216 CCACGTCCTCGCCTTCTTCGCCGCGTCCGACGGAATCGTCAACGAAAACCTGGTGGAGCG 2860157 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || |||||||| || |||||||| || Sbjct 2860156 CTTCAGCGGGGAGGTCCAGGTCCCCGAGGCTCGTTGCTTCTATGGTTTCCAGATCATGAT 2860097 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| |||||| ||| || Sbjct 2860096 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATTGACACCTACATCAAGGAGCC 2860040 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGA------------------CG----- 42629 | |||| | | |||||| | ||||| || | || Sbjct 2860039 CAAGCAGCGCACCTACCTGTTCGATGCCATTGATACCAGTACGTGATAAACACCGGTATC 2859980 Query 42630 -------------ATGC----------------CCTGCATCAAGAAGAAGGCGGACTGGG 42660 |||| | |||||| |||||||| || |||| Sbjct 2859979 ATCCATCAAACACATGCTAACGCGTCGCAGTTCCTTGCATCCGCAAGAAGGCTGAGTGGG 2859920 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | |||| ||||| || || | || || | || | || || ||||| ||| Sbjct 2859919 CCATCAAGTGGATTCAGGACAAGGAGTCCACCTTTGCTCAGCGTCTCGTTGCCTTCGCCG 2859860 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 | || ||||||||||||||||| ||| |||| || || ||||||||||| ||| || | Sbjct 2859859 CTGTGGAGGGCATCTTCTTCTCCGGCTCCTTTGCTTCGATCTTCTGGCTGAAGAAGCGTG 2859800 Query 42781 TGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 ||| |||||| || ||||||||||| ||||| || ||| | || ||||| ||||| Sbjct 2859799 -GTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTGCAC 2859741 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG-AAGGAGCG 42898 | |||||||| || || |||||||| |||||||| ||| ||||| | |||||| Sbjct 2859740 ACCGACTTTGCTTGTCTGCTGTTCTC---CCACCTCAACCAC-CGCCCTAGCAAGGAGAT 2859685 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 |||| | ||||||||| || ||||| | ||||||| |||||||||| ||| | | || Sbjct 2859684 TGTCCAGAACATCATCACCGACGCCGTCGCGATCGAGCAGGAGTTCCTGACGGATGCTCT 2859625 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 |||||| |||| | ||||||||| | | ||||||||| |||||||| ||| |||||| Sbjct 2859624 GCCCGTCAACCTGCTTGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGC 2859565 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077 |||| || || ||| | ||| || | ||||||| | | ||||||| Sbjct 2859564 TGACCGACTTCTCGTGGCTCTTGGCAACAAGAAG-TACTACAACGCCACCAATCCCTTCG 2859506 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 |||| ||||| ||||||||| || |||||||||||||| ||||||||||| |||| | Sbjct 2859505 ACTTCATGGACAACATCTCGCTGTCCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTG 2859446 Query 43138 ACTACCAG 43145 |||||||| Sbjct 2859445 ACTACCAG 2859438 >seq1 Length=6618042 Score = 181 bits (200), Expect = 2e-40 Identities = 1021/1634 (62%), Gaps = 112/1634 (7%) Strand=Plus/Plus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTC 243936 |||||| ||||| |||||||| ||| | | || || || ||||| | || | Sbjct 2614533 GTTGAGAGACTGAGACTGGTCGATGAACGCACCACGGTCAGCAGCCATCTGAAGGATATG 2614592 Query 243937 CTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTC 243996 ||| || ||||| || | |||||||||| || ||||| || | |||| || Sbjct 2614593 GCGCTGCGAGATCTCCCACACTGTCTTGTAGAGGGCCTTGATGTCTGCAGGGATG--TTG 2614650 Query 243997 G--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCAC 244054 | |||||||| | || || | | | |||| || | |||||| || ||| Sbjct 2614651 GGAATGTTCTGAATAGAACCACCTTCGGCAATGATACGGTTCTTCATGTTGTCAGACCAG 2614710 Query 244055 AGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGAC 244114 ||||| | | | || ||| || ||| ||| || || || ||||| || | Sbjct 2614711 AGGCCAAGGTCGACAAGATCCTTGAGCAGCCAGGGGTTGACAACTTGGAACTCGCCGGCA 2614770 Query 244115 AGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGT 244174 || || || || |||| ||| | || ||||||| || || | ||| || Sbjct 2614771 AGAACACGACGGGAATAGATGTTCGAGGTGTAGGGCTCGAAGCATTCATTAAAGCCGAGG 2614830 Query 244175 ATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGC 244234 ||||| ||||||||||| ||||| || | ||| |||| ||||| | || |||||| Sbjct 2614831 ATCTGACTGGTGCTCGCAGTGGGCATAGGAGCCACGAGCAAGCTGTTGCGGACACCGTGC 2614890 Query 244235 CTCTGGATGCGGAGTCTG-AGCTCGTTCCAGTCCCACATGCCCGAGAG-GTCCTCGCGTT 244292 | ||| | || || ||| | |||| ||||| | | | | | | ||||| Sbjct 2614891 TTGGCGAT-CTCAGCCTTCAGCGAGCTCCAATCCCAGAGGTCAGTGGGAGTCCT------ 2614943 Query 244293 TGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCG 244352 | ||||||||||| |||| || | |||| | ||| || ||| || || ||| Sbjct 2614944 ----GTCCCACATGTCATACTGGAGAATTCCCTGGGAGACTGGCGAGCCTTCATATGTCT 2614999 Query 244353 GGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATG 244411 || | || | ||| ||||| || || | | || |||||| ||| |||||| Sbjct 2615000 CATACGTGCCATGCTGCTTGGCCAACTCGACCGA-CGCGGTGAGGGCACCGTGGTAGATA 2615058 Query 244412 GTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGA-----AGGGGATGC 244466 |||||||||||| |||||| | |||| ||| |||| || | || | || Sbjct 2615059 GTCTCGAAGATCTGAATGTTCAGCT-----GCCTAGCCTCAGGAGAGTCGAATGGCAAGC 2615113 Query 244467 CCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCT 244526 || | ||| | ||||| || || | || || | | || || | ||| || Sbjct 2615114 GCAGTGCAAGGAATGCATCGGCAAGACCATTGACACCAAGAGCAATCGGACGGTGGCGGA 2615173 Query 244527 TGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGT 244586 |||| | |||| || || || ||||| ||||| ||||| | |||||| | || Sbjct 2615174 GGTTGCTCTTCTTGGCCTCTGGAACAGGGTAGTAGTTGATATCGATGATCTTGTTCAAGT 2615233 Query 244587 TGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTA---GGGAT 244643 |||| || | || ||| ||| |||| |||||| |||||| || | Sbjct 2615234 TGCGAACGAGGACCTGGGTGACCTCGTGCAGCTTGCCAAAGTCATACTCGCCACGGGCAG 2615293 Query 244644 CCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGG 244703 | ||| ||| ||| | ||| | || ||||| ||||||||| | Sbjct 2615294 CGTCGACGAAGGTAGGCAATGCAA-----------GAGA----GGCCAAGTTGCAGACAG 2615338 Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 | ||||| || | | | | |||| || |||||| ||||||||||| || ||| | Sbjct 2615339 CAACCTCGTCAGGGGCGCTATACTCGATAATCTCAGTGCAGAGGTTGGAGCTGCGGATAG 2615398 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 | ||||||| || || ||| ||| |||||| || |||||||| |||||||| || Sbjct 2615399 TACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCATCCTTGTACAGCATGAATGGGG 2615458 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 |||||||| ||| || |||| | | || ||| || | | |||||| || |||| Sbjct 2615459 TTCCGGTCTCCGTCTGCGCCTCGAGAATGGCGTACCAAAGTTTCTGAGCCTTAACAGTCC 2615518 Query 244884 TGCGAGCCT-TGCCCTCTGCCTCGTAGCG------------------------------- 244911 |||| |||| |||| ||| ||| || | Sbjct 2615519 TGCG-GCCTCTGCCTTCTTGCTCATACCTAATTACAGGTTAGCTTGGTTTTTGAAAGTTC 2615577 Query 244912 ---GGTG-----------------TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCT 244951 |||| || || ||||||||||| ||| | || || | Sbjct 2615578 GGAGGTGAAAATGCTTACTTGTGGTAAAGAGCCTCGAACTCCTCGCCGTACACATCAGCG 2615637 Query 244952 AGGCCGGGG--CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCT 245009 ||||| || | || | ||||| | || |||| || ||| ||| ||| | || Sbjct 2615638 AGGCCAGGAGCCTCGTTG--GGGCAGAACAGTGTCCAGTCACCGTTCGCCTCGACACGCT 2615695 Query 245010 GCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCG 245069 |||||||||||| || ||||||| || | |||||| || | | || || ||| Sbjct 2615696 TCATGAAGAGGTCCGGAGTCCAGAGAGCGTAGAAGAGATCACGAGCTCTAACTTCTTCCT 2615755 Query 245070 AGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGT 245129 ||| |||||| | || ||||| ||||| |||| || |||||| ||||||| || Sbjct 2615756 TGCCGTGGTTCTTGCGAAGATCCAAGAAGTCGAAGATATCAGAGTGCCAAGGCTCCAGGT 2615815 Query 245130 AGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG-CG 245188 ||| ||||| || || || |||||||| ||||||||||| || || | || | | Sbjct 2615816 AGATAGCGAAAGCACCAGGGCGCTTGTTTCCTCCCTGGTCGACGTATCTGGC-AGTGTTG 2615874 Query 245189 TTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAG 245248 ||||||| || || | || || || ||||| || || ||||| || ||||||| Sbjct 2615875 TTGAAGACCCGGAGCATGGGGACAATTCCGTTGGAAGATCCATTGGTACCAGAGATGTAG 2615934 Query 245249 GCGCCCTTGCCCCTGA---GGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAG 245305 | ||| || | | || ||| | || || | || | || || ||| ||| ||| Sbjct 2615935 GAGCCGGTGGCGCGGATACGGTGGATGTTG---AGACCAATACCACCAGCGGTCTTTGAG 2615991 Query 245306 ATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTG 245365 || || || || |||||| ||||| || ||||| |||||||| |||||||| | Sbjct 2615992 ATCAGCGCACAAGTCTTGAGAGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCG 2616051 Query 245366 AGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTG 245425 | || |||||||||| ||||| |||| || | | | ||||||||| || || Sbjct 2616052 ACGAGGAAGCAGGAGGCGAGCTGCGGCTGAGGAGTACCGGCGTTGAACAGGGTTGGAGAA 2616111 Query 245426 GCGTGGGTAAAGTA 245439 || || || ||||| Sbjct 2616112 GCATGAGTGAAGTA 2616125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338810460080