Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 111 3e-19 >seq2 Length=4789688 Score = 111 bits (122), Expect = 3e-19 Identities = 310/468 (66%), Gaps = 6/468 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 |||||| |||||||||| |||| | || || || || | || ||||| || Sbjct 2859887 TTTGCTCAGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTT- 2859829 Query 243349 TGCGCC-ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 243407 ||| | ||||| |||||| ||| ||| |||||||||| ||| | || ||||| Sbjct 2859828 TGCTTCGATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGA 2859769 Query 243408 GTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCT 243467 | | ||| ||| || ||||| || ||| | || | | || ||| || | || Sbjct 2859768 GCTGATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCCCACCT 2859709 Query 243468 CCAGAACAAGC-TACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACG 243526 | | || | || || || | ||| | | |||||||| || || || | | || Sbjct 2859708 CAACCACCGCCCTAGCAAG-GAGATTGTCCAGAACATCATCACCGACGCCGTCGCGATCG 2859650 Query 243527 AAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCA 243586 | |||| ||| | || ||| | || | || ||||||||||| | | |||| Sbjct 2859649 AGCAGGAGTTCCTGACGGATGCTCTGCCCGTCAACCTGCTTGGCATGAACGCCAAGCTCA 2859590 Query 243587 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG 243646 || | ||||||||||| ||||| || ||||| || || | || ||||| | |||| Sbjct 2859589 TGTGCCAGTACATCGAGTTCGTCGCTGACCGACTTCTCGTGGCTCTTGGCAACAAGAAGT 2859530 Query 243647 TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTA 243706 |||||| ||| || ||||| | ||| ||||| ||| ||||| || || || | Sbjct 2859529 ACTACAACGCCACCAATCCCTTCGACTTCATGGACAACATCTCGCTGTCCGGCAAGACCA 2859470 Query 243707 ACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATG 243753 |||||||||| ||||||||| |||| || || | | || ||||| ||| Sbjct 2859469 ACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCC-GGTGTCATG 2859423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879533688550