Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 2e-18
seq7 102 9e-17
>seq3
Length=4355815
Score = 107 bits (118), Expect = 2e-18
Identities = 147/198 (74%), Gaps = 7/198 (4%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || |||||| || | || || ||||||||||||||||| |
Sbjct 2043491 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 2043550
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 42137
| || ||||||||||| | || | | |||||||||| ||| | || | |||| |||
Sbjct 2043551 TAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGTT 2043608
Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | ||||||||||| || || |||| || ||||| || ||||| || ||||| ||
Sbjct 2043609 GTCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGAC 2043668
Query 42197 AAAGAT-TTGCATTTTCA 42213
||| | ||| ||||||
Sbjct 2043669 GAAGCTGTTG--TTTTCA 2043684
>seq7
Length=1958609
Score = 102 bits (112), Expect = 9e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065
|||| ||| |||||| ||||||||||| || | || || || | || || ||||||
Sbjct 430734 TGCAGTGTAGACTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGC 430793
Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125
||||||||||| || || ||||||||||| | || | | |||||||||| ||||||
Sbjct 430794 TTACCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATTTTC 430853
Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185
|| | | | | || || |||||| || |||| || ||||| || || ||
Sbjct 430854 GACTTCACGTTATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGTCTTTCCGGTG 430913
Query 42186 AGCGTCTTTACAAAGATTTGCATT 42209
|| ||||| || || || ||||||
Sbjct 430914 AGGGTCTTGACGAAAATCTGCATT 430937
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
||||||||||| || || || || || | || || || | || || |||||||| ||
Sbjct 430968 GTGCTCTCCTTCTGGATGTTATAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCT 431027
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131
||||| || || ||||||||||| | || | | |||||||||| ||| || |||
Sbjct 431028 GCGAAGATCAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 431087
Query 42132 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190
| ||| | | | ||||||||||| ||||| || | ||||| || ||||| || || ||
Sbjct 431088 A-CGTTGTCGATGGTGTCGCTCGACTCCACCTCCAGGGTGATAGTCTTGCCGGTGAGGGT 431146
Query 42191 CTTTAC 42196
||| ||
Sbjct 431147 CTTGAC 431152
Score = 96.9 bits (106), Expect = 4e-15
Identities = 145/202 (72%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
||||||||||| || |||||||| || | || || || |||| || |||||||| ||
Sbjct 430512 GTGCTCTCCTTCTGGATATTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCC 430571
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131
||||| || | ||||||||||| | ||| | | |||||||||| ||| || ||
Sbjct 430572 GCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGCTCTTC 430631
Query 42132 AGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187
| ||| | | | ||||| |||| || || || | ||| ||||| || || || ||
Sbjct 430632 A-CGTTGTCGATTGTGTCAGAGCTC---TCGACCTCCAGCGTAATGGTCTTTCCGGTCAG 430687
Query 42188 CGTCTTTACAAAGATTTGCATT 42209
||||| || ||||| ||||||
Sbjct 430688 AGTCTTCACGAAGATCTGCATT 430709
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||| || | ||| |||||| || || || || || | || || || |
Sbjct 431234 ACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGCGTGCGACC 431293
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || |||||||| || ||||| || | ||||||||||| | || | | ||||||
Sbjct 431294 GTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATACCCTCCTT 431353
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|||| ||| || |||| ||| | | | ||||||||||| ||||| || | ||||
Sbjct 431354 GTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGA 431412
Query 42172 TGGTTTTGCCCGT 42184
| || ||||| ||
Sbjct 431413 TAGTCTTGCCGGT 431425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212575924720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |