Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 205 9e-48 seq3 109 5e-19 seq7 89.7 5e-13 >seq2 Length=4789688 Score = 205 bits (226), Expect = 9e-48 Identities = 362/523 (69%), Gaps = 25/523 (5%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-- 52383 || || ||| | ||||| |||||| ||||||| || |||||||| || |||| | Sbjct 2859950 GTTCCTTGCATCCGCAAGAAGGCTGAGTGGGCCATCAAGTGGATTCAG---GACAAGGAG 2859894 Query 52384 -CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 |||| | || |||| | || ||||||||| || |||||| | || || |||||| Sbjct 2859893 TCCACCTTTGCTCAGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGC 2859834 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 |||||| | ||||| | | || | | || | ||||| || || || ||| | Sbjct 2859833 TCCTTTGCTTCGATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCC 2859774 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT------CTAC 52556 |||||| |||| || || || || || |||||||| |||||||| || || || | Sbjct 2859773 AACGAGCTGATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCC 2859714 Query 52557 TACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAG 52616 || | | | | || | || |||| ||| || ||| ||| || Sbjct 2859713 CACCTCAACCACC-GCCCTAGCAAGGAGATTG--------TCCAGAACATCATCACCGAC 2859663 Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 || || || ||||| ||||||| | |||| || ||||| ||| | ||||| |||||| Sbjct 2859662 GCCGTCGCGATCGAGCAGGAGTTCCTGACGGATGCTCTGCCCGTCAACCTGCTTGGCATG 2859603 Query 52677 AACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736 ||||| || ||||||| ||||||||||||| || || || || || | ||| |||| Sbjct 2859602 AACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGACTTCTCGTG--GCTC 2859545 Query 52737 G-GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794 |||| | | ||||||| |||||| |||||| || || || ||| ||||||| |||| Sbjct 2859544 TTGGCAACAAGAAGTACTACAACGCCACCAATCCCTTCGACTTCATGGACAACATCTCGC 2859485 Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | |||||||||||||| ||||||||||| ||||| || || Sbjct 2859484 TGTCCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 2859442 >seq3 Length=4355815 Score = 109 bits (120), Expect = 5e-19 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||||| ||| || |||||||| || ||||| | ||| Sbjct 2043491 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 2043550 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTG 138542 | |||||||| |||||||| || ||||| || ||||| ||| | || | || | ||| Sbjct 2043551 TAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG 2043609 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||||| ||||||| || |||| || | || ||||| ||||| || || || Sbjct 2043610 -TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGAC 2043668 Query 138603 AAA 138605 || Sbjct 2043669 GAA 2043671 >seq7 Length=1958609 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||| |||||||| || || || ||||| || || ||||| | Sbjct 430743 GACTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCG 430802 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || ||||| || ||||| |||||| || | Sbjct 430803 AAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTCACG 430862 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | ||| || || |||| || | || || || || || || || Sbjct 430863 TTATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTG 430922 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 430923 ACGAAAATCTGCAT 430936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262195291760