Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 3e-29
seq7 122 8e-23
seq3 93.3 4e-14
>seq2
Length=4789688
Score = 143 bits (158), Expect = 3e-29
Identities = 349/522 (67%), Gaps = 29/522 (6%)
Strand=Plus/Minus
Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129
|| ||| | |||| ||||| ||||||||||| |||| ||| | || | | |||
Sbjct 2859947 CCTTGCATCCGCAAGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGTCCACC 2859888
Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189
| || | ||| | | || |||||| || |||||| |||||||||| ||| ||||
Sbjct 2859887 TTTGCTCAGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTTT 2859828
Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249
|| |||| || | |||| | || | ||||| || ||||| || |||||||
Sbjct 2859827 GCTTCGATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAG 2859768
Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGT---CTCTACTACAAC--- 47303
|| ||||| | || || || ||||||||| ||||||| ||| || | || | ||
Sbjct 2859767 CTGATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCCCACCTC 2859708
Query 47304 -ACTAGAG-TCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361
|| | | | | ||| ||| | ||| |||| | |||| ||||
Sbjct 2859707 AACCACCGCCCTAGCAA-----GGA------GATTGTCCAGAACATCATCACCGACGCCG 2859659
Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAGTGGGAATGAA 47419
|||| || ||| |||||| | | || |||||||||| || | | | || |||||
Sbjct 2859658 TCGCGATCGAGCAGGAGTTCCTGACGGATGCTCTGCCCGTCAACC--TGCTTGGCATGAA 2859601
Query 47420 CGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAA 47479
||| || | ||| | |||||||||| || ||||| ||||| || ||||| |||
Sbjct 2859600 CGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGACTTCTCGT--GGCTCTT 2859543
Query 47480 GTATCCCAAGATTTACCACA---CCGAGAATCCATTCGAGTTTATGAACAACATTTCGCT 47536
| ||||| ||| ||| || ||||| ||||| || ||| ||||||| |||||
Sbjct 2859542 G-GCAACAAGAAGTACTACAACGCCACCAATCCCTTCGACTTCATGGACAACATCTCGCT 2859484
Query 47537 CGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||||||||||||| ||||||||||| ||||| || ||
Sbjct 2859483 GTCCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 2859442
>seq7
Length=1958609
Score = 122 bits (134), Expect = 8e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || ||||||||||| || || ||||| ||| || ||||| || |||
Sbjct 430740 GTAGACTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGCTTACCA 430799
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| || || || || |||||||||||| ||||||| |||
Sbjct 430800 GCGAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTC 430859
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||| || | |||||||||| ||| | || || ||||| || ||
Sbjct 430860 ACGTTATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGTCTTTCCGGTGAGGGTC 430919
Query 127097 TTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 430920 TTGACGAAAATCTGCAT 430936
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || |||||||| ||| | ||||||| || || ||||| || || ||| |
Sbjct 430517 CTCCTTCTGGATATTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAA 430576
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
|||||| |||||||| || || || || |||||||||||| ||| || ||| | |||
Sbjct 430577 GATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTT 430636
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
| |||| ||||| | |||||||| || | || | || || ||||||||||| || |
Sbjct 430637 G-TCGATTGTGTCAGAGCTCTCGACCTCCAGCGTAATGGTCTTTCCGGTCAGAGTCTTCA 430695
Query 127101 CAAAAATCTGCAT 127113
| || ||||||||
Sbjct 430696 CGAAGATCTGCAT 430708
Score = 100 bits (110), Expect = 3e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | ||||| || | || ||||| || || || || || |||
Sbjct 431222 TCCACCACGGAGACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGA 431281
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| ||||||| || || ||||| || || ||| ||||||| |||||||| || || ||
Sbjct 431282 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGG 431341
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064
|| |||||||||||| ||| || ||||| |||| |||| |||||| | ||| |
Sbjct 431342 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCGCTCGACTCCA 431400
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCA 127091
| || | ||| | || ||||||||||
Sbjct 431401 CCTCAAGGGTGATAGTCTTGCCGGTCA 431427
>seq3
Length=4355815
Score = 93.3 bits (102), Expect = 4e-14
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| |||| || ||||| ||| || ||||| || |||||| ||||
Sbjct 2043493 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATA 2043552
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044
| |||||||| || || || || |||||||||||| || || ||||| |||| ||
Sbjct 2043553 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TC 2043611
Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
|| |||||| | |||||| |||| ||| | || || || ||||| || || || ||
Sbjct 2043612 GATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 2043671
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500603855920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |