Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 seq7 122 8e-23 seq3 93.3 4e-14 >seq2 Length=4789688 Score = 143 bits (158), Expect = 3e-29 Identities = 349/522 (67%), Gaps = 29/522 (6%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 || ||| | |||| ||||| ||||||||||| |||| ||| | || | | ||| Sbjct 2859947 CCTTGCATCCGCAAGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGTCCACC 2859888 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | || | ||| | | || |||||| || |||||| |||||||||| ||| |||| Sbjct 2859887 TTTGCTCAGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTTT 2859828 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 || |||| || | |||| | || | ||||| || ||||| || ||||||| Sbjct 2859827 GCTTCGATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAG 2859768 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGT---CTCTACTACAAC--- 47303 || ||||| | || || || ||||||||| ||||||| ||| || | || | || Sbjct 2859767 CTGATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCCCACCTC 2859708 Query 47304 -ACTAGAG-TCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361 || | | | | ||| ||| | ||| |||| | |||| |||| Sbjct 2859707 AACCACCGCCCTAGCAA-----GGA------GATTGTCCAGAACATCATCACCGACGCCG 2859659 Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAGTGGGAATGAA 47419 |||| || ||| |||||| | | || |||||||||| || | | | || ||||| Sbjct 2859658 TCGCGATCGAGCAGGAGTTCCTGACGGATGCTCTGCCCGTCAACC--TGCTTGGCATGAA 2859601 Query 47420 CGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAA 47479 ||| || | ||| | |||||||||| || ||||| ||||| || ||||| ||| Sbjct 2859600 CGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGACTTCTCGT--GGCTCTT 2859543 Query 47480 GTATCCCAAGATTTACCACA---CCGAGAATCCATTCGAGTTTATGAACAACATTTCGCT 47536 | ||||| ||| ||| || ||||| ||||| || ||| ||||||| ||||| Sbjct 2859542 G-GCAACAAGAAGTACTACAACGCCACCAATCCCTTCGACTTCATGGACAACATCTCGCT 2859484 Query 47537 CGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||||||||||| ||||||||||| ||||| || || Sbjct 2859483 GTCCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 2859442 >seq7 Length=1958609 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||||||||| || || ||||| ||| || ||||| || ||| Sbjct 430740 GTAGACTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGCTTACCA 430799 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || || |||||||||||| ||||||| ||| Sbjct 430800 GCGAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTC 430859 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | |||||||||| ||| | || || ||||| || || Sbjct 430860 ACGTTATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGTCTTTCCGGTGAGGGTC 430919 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 430920 TTGACGAAAATCTGCAT 430936 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || |||||||| ||| | ||||||| || || ||||| || || ||| | Sbjct 430517 CTCCTTCTGGATATTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAA 430576 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 |||||| |||||||| || || || || |||||||||||| ||| || ||| | ||| Sbjct 430577 GATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTT 430636 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||||| | |||||||| || | || | || || ||||||||||| || | Sbjct 430637 G-TCGATTGTGTCAGAGCTCTCGACCTCCAGCGTAATGGTCTTTCCGGTCAGAGTCTTCA 430695 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 430696 CGAAGATCTGCAT 430708 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| || | || ||||| || || || || || ||| Sbjct 431222 TCCACCACGGAGACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGA 431281 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 431282 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGG 431341 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||||| ||| || ||||| |||| |||| |||||| | ||| | Sbjct 431342 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCGCTCGACTCCA 431400 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCA 127091 | || | ||| | || |||||||||| Sbjct 431401 CCTCAAGGGTGATAGTCTTGCCGGTCA 431427 >seq3 Length=4355815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || ||||| ||| || ||||| || |||||| |||| Sbjct 2043493 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATA 2043552 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 | |||||||| || || || || |||||||||||| || || ||||| |||| || Sbjct 2043553 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TC 2043611 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | |||||| |||| ||| | || || || ||||| || || || || Sbjct 2043612 GATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 2043671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500603855920