Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 172 7e-38 seq2 154 2e-32 >seq1 Length=6618042 Score = 172 bits (190), Expect = 7e-38 Identities = 419/624 (67%), Gaps = 12/624 (2%) Strand=Plus/Plus Query 116663 TTGTG-TAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATC 116720 ||||| || || ||||| ||||| || || ||| | || | ||| || || |||| | Sbjct 2615596 TTGTGGTAAAGAGCCTCGAACTCCTCGCCGTACA-CATCAGCGAGGCCAGGAGCCTCGTT 2615654 Query 116721 TGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 116780 || ||||| || | ||| | ||| | |||| || ||||||||||||||||| || | Sbjct 2615655 GGGGCAGAACAGTGTCCAGTCACCGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGAGT 2615714 Query 116781 CCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAA 116840 |||||| || |||||||||| ||| | | ||||||| | || || || || | Sbjct 2615715 CCAGAGAGCGTAGAAGAGATCACGAGCTCTAACTTCTTCCTTGCCGTGGTTCTTGCGAAG 2615774 Query 116841 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 116900 ||||| ||||| | |||||| | |||||| || |||||||| | |||| | || Sbjct 2615775 ATCCAAGAAGTCGAAGATATCAGAGTGCCAAGGCTCCAGGTAGATAGCGAAAGCACCAGG 2615834 Query 116901 GCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGG 116957 ||| || |||||| || || || || || ||| || || || ||||| || Sbjct 2615835 GCGCTTGTTTCCTCCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATGGG 2615894 Query 116958 AATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACA 117015 | || || | || ||||| || || || || ||| | | |||| | || | Sbjct 2615895 GACAATTCCGTTGGAAGATCCATTGGTACCAGAGATGTAGGAGCC--GGTGGCGCGGATA 2615952 Query 117016 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGA 117075 |||||||| | ||||||||| || || ||||||||| | || || | ||||| Sbjct 2615953 CGGTGGATGTTGAGACCAATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGA 2616012 Query 117076 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 117135 || |||| || || || || ||| |||| | ||| |||||||||| | | Sbjct 2616013 GTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGC 2616072 Query 117136 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TG 117194 || ||| || ||||| |||||||| |||||||| | || || |||| ||| | || Sbjct 2616073 TGCGGCTGAGGAGTACCGGCGTTGAACAGGGTTGGAGAAGCATGAGTGAA-GTACTTCTG 2616131 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 ||||||| | ||| ||||| | ||| |||||| || ||||| || || | | Sbjct 2616132 GGACATCAGGTTGTACGTCTCAATGACCTTCTCAATGTCATCACCGTGGATTCCAACAGC 2616191 Query 117255 GACCCGCATAAACATGTATTGGGG 117278 || ||||||| ||||| ||||| Sbjct 2616192 AACACGCATAATCATGTGCTGGGG 2616215 >seq2 Length=4789688 Score = 154 bits (170), Expect = 2e-32 Identities = 162/210 (77%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| |||||||| ||||| ||||| || || || |||||| ||||| Sbjct 2859729 AGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGACC 2859788 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| ||||| |||||||||| |||||| |||| | ||| ||||| ||||||||||| Sbjct 2859789 AGGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCGGAGAAGAAGAT 2859848 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGT-ATC 127695 ||||||||| ||||| |||| ||||||| ||||||| ||||| |||| | Sbjct 2859849 GCCCTCCACAGCGGCGAAGGCAACGAGACGCTGAGCAAAGG---TGGACTCCTTGTCCTG 2859905 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTT 127725 || |||||| || ||||||| ||||| || Sbjct 2859906 AATCCACTTGATGGCCCACTCAGCCTTCTT 2859935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506946928280