Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 179 6e-40 seq1 118 2e-21 >seq2 Length=4789688 Score = 179 bits (198), Expect = 6e-40 Identities = 337/495 (68%), Gaps = 3/495 (1%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| || || || |||||||| |||| || || Sbjct 2859456 CTTCTCGAAGAAGTTGGTCTTGCCGGACAGCGAGATGTTGTCCATGAAGTCGAAGGGATT 2859515 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| |||| || |||||| | || | | ||| || || || || Sbjct 2859516 GGTGGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACGAGAAGTCGGTCAGCGACGAACTC 2859575 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| ||| ||| || || ||||| | ||||| || || |||| Sbjct 2859576 GATGTACTGGCACATGAGCTTGGCGTTCATGCCAAGCAGGTTGACGGGCAGAGCATCCGT 2859635 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 ||| ||||||| ||| ||| |||| || ||||| | || | | |||| || | | Sbjct 2859636 CAGGAACTCCTGCTCGATCGCGACGGCGTCGGTGATGATGTTCTGGACAATCTCCTTGCT 2859695 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 || || || ||| ||||| || || ||||||||| |||||| ||||| Sbjct 2859696 AGG---GCGGTGGTTGAGGTGGGAGAACAGCAGACAAGCAAAGTCGGTGTGCAGACCCTC 2859752 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 || |||||||| | ||||||||| | | |||| || ||||| | |||||| || || Sbjct 2859753 ATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCACGCTTCTTCAG 2859812 Query 160009 CCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 ||| || || | ||||| | ||| || ||||| |||||||| || || || || || Sbjct 2859813 CCAGAAGATCGAAGCAAAGGAGCCGGAGAAGAAGATGCCCTCCACAGCGGCGAAGGCAAC 2859872 Query 160069 GAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTT 160128 ||| | || | |||| | || | |||| || ||||| | ||||||| |||||||| Sbjct 2859873 GAGACGCTGAGCAAAGGTGGACTCCTTGTCCTGAATCCACTTGATGGCCCACTCAGCCTT 2859932 Query 160129 CTTTGCGATGCACGG 160143 ||| |||||| || Sbjct 2859933 CTTGCGGATGCAAGG 2859947 >seq1 Length=6618042 Score = 118 bits (130), Expect = 2e-21 Identities = 445/687 (65%), Gaps = 12/687 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAAT-GGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 || |||||| || |||||||| || | | ||||| | | | | || |||||||||| Sbjct 2614398 CTGGTCCACAGTAAACTGAATTGGAGCGGA-GGCAGCCATAGTACGAAGGTAGTACATGC 2614456 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| || ||| ||| |||||| | ||||||| | | |||| || | | Sbjct 2614457 CAGTCTTCAGACCCATCTTCCACCCAGCGAAGTGCATGCTGGTAATCTTGCCCATAGTAG 2614516 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | || |||||||||||| |||||||| ||||||||||| | | || || || | Sbjct 2614517 GCTCCTTCATGTGAATGTTGAGAGACTGAGACTGGTCGATGAACGCACCACGGTCAGCAG 2614576 Query 204018 CCAT---ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 |||| | ||| |||| |||||| ||||||||||| |||||| | | | | || Sbjct 2614577 CCATCTGAAGGAT-ATGG--CGCTGCGAGATCTCCCACACTGTCTTGTAGAGGGCCTTGA 2614633 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 ||| | ||| | | | | || ||| || || || ||||| || | | || Sbjct 2614634 TGTCTGCAGGGATGT-TGGGAATGTTCTGAATAGAACCACCTTCGGCAATGATACGGTTC 2614692 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | || ||| | ||| | || || ||| | ||| |||||||| Sbjct 2614693 TTCATGTTGTCAGACCAGAGGCCAAGGTCGACAAGATCCTTGAGCAGCCAGGGGTTGACA 2614752 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | || || || |||| || || | |||| | | ||| |||| | || ||||| Sbjct 2614753 ACTTGGAACTCGCCGGCAAGAACACGACGGGAATAGATGTTCGAGGTGTAGGGCTCGAAG 2614812 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 || || ||||| |||||| |||||| || |||||||| ||||||| ||||| | Sbjct 2614813 CATTCATTAAAGCCGAGGATCTGACTGGTGCTCGCAGTGGGCATAGGAGCCACGAGCAAG 2614872 Query 204314 GAGTTGCGCACACCGTATTTTTGGA-CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||| ||||||| || || | | || |||||| ||| |||| || | | Sbjct 2614873 CTGTTGCGGACACCGTGCTTGGCGATCTCAGC-CTTCAGCGAGCTCCAATCCCAGAGGTC 2614931 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTT 204432 | |||| || | |||||||||| |||| | || || || |||||| ||| | Sbjct 2614932 AGTGGGAGTCCTGTCCCACATGTCATACTGGAGAATTCCCTGGGAGACTGGCGAGCCTTC 2614991 Query 204433 GTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATA 204492 || ||| ||| | || || | |||| || | ||| |||| | ||| | Sbjct 2614992 ATATGTCTCATACGTGCCATGCTGCTTGGCCAACTCGACCGACGCGGTGAGGGCACCGTG 2615051 Query 204493 GTACATGGTCTCAAAGATCTGAACGTT 204519 ||| || ||||| |||||||||| ||| Sbjct 2615052 GTAGATAGTCTCGAAGATCTGAATGTT 2615078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154871998480