Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq7 150 2e-31
seq3 111 2e-19
seq1 86.0 7e-12
>seq7
Length=1958609
Score = 150 bits (166), Expect = 2e-31
Identities = 164/214 (77%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | || |||||||| ||||||||||||||||| || ||||| |||| ||
Sbjct 430500 ACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAGAGCGTGCGACCGTCCTCA 430559
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| ||||||||||||||||| | || | | |||||||||| |
Sbjct 430560 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 430619
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560
||||| |||| | ||| | | | ||||| |||| || || |||| ||| |||||
Sbjct 430620 ATCTTGCTCTTCA-CGTTGTCGATTGTGTCAGAGCTC---TCGACCTCCAGCGTAATGGT 430675
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| || ||||| || || || ||||| ||||||
Sbjct 430676 CTTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 430709
Score = 141 bits (156), Expect = 1e-28
Identities = 156/205 (76%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| || || || | || |||||||| ||||| || |||||||| || ||||| |
Sbjct 430949 ACGCAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGGGTGCGGCC 431008
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| |||||||||||||| ||||| |||| |||||||||||| | || | | ||||||
Sbjct 431009 ATCCTCGAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATACCCTCCTT 431068
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| |||||| ||||| ||| | | | ||||||||||| ||||| |||| ||||
Sbjct 431069 GTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGCTCGACTCCACCTCCAGGGTGA 431127
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAAC 46581
| || ||||| || || || || ||
Sbjct 431128 TAGTCTTGCCGGTGAGGGTCTTGAC 431152
Score = 138 bits (152), Expect = 1e-27
Identities = 149/195 (76%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | |||||| || | || |||||| ||||| || |||||||| || ||||| |
Sbjct 431234 ACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGCGTGCGACC 431293
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || ||||||||||| ||||| ||||||||||||||||| | || | | ||||||
Sbjct 431294 GTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATACCCTCCTT 431353
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| |||||| ||||| ||| | | | ||||||||||| ||||| || | ||||
Sbjct 431354 GTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGA 431412
Query 46557 TGGTTTTGCCCGTCA 46571
| || ||||| ||||
Sbjct 431413 TAGTCTTGCCGGTCA 431427
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| || |||| |||| |||||| || ||||||||||| || | ||||| | || ||
Sbjct 430728 ACAAGGTGCAGTGTAGACTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCC 430787
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || ||||| || | ||||||||||| | || | | |||||||||| |
Sbjct 430788 AGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 430847
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|| ||| ||| | | | | || || |||||| || || | || ||||| ||
Sbjct 430848 ATTTTCGACTTCACGTTATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGTCTTT 430907
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| || || || || || || || ||||||
Sbjct 430908 CCGGTGAGGGTCTTGACGAAAATCTGCATT 430937
>seq3
Length=4355815
Score = 111 bits (122), Expect = 2e-19
Identities = 136/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||| |||||||| | || ||||||||||| || ||||| |
Sbjct 2043491 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 2043550
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
| | ||||||||||| | || | | |||||||||| ||||| ||||| ||| |
Sbjct 2043551 TAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTG 2043609
Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||||||||| || || || | || ||||| || |||||||| || || ||
Sbjct 2043610 TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 2043669
Query 46583 AAG 46585
|||
Sbjct 2043670 AAG 2043672
>seq1
Length=6618042
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| || | || |||||| ||||| ||||| || || || ||||| ||
Sbjct 1741409 CGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCG 1741350
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || |||||||| || ||||| |||| ||||||||||| | || | | |||||||
Sbjct 1741349 TCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTG 1741290
Query 46499 TC 46500
||
Sbjct 1741289 TC 1741288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238166839160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |