Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7 150 2e-31 seq3 111 2e-19 seq1 86.0 7e-12 >seq7 Length=1958609 Score = 150 bits (166), Expect = 2e-31 Identities = 164/214 (77%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | || |||||||| ||||||||||||||||| || ||||| |||| || Sbjct 430500 ACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAGAGCGTGCGACCGTCCTCA 430559 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| ||||||||||||||||| | || | | |||||||||| | Sbjct 430560 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 430619 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| |||| | ||| | | | ||||| |||| || || |||| ||| ||||| Sbjct 430620 ATCTTGCTCTTCA-CGTTGTCGATTGTGTCAGAGCTC---TCGACCTCCAGCGTAATGGT 430675 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || ||||| || || || ||||| |||||| Sbjct 430676 CTTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 430709 Score = 141 bits (156), Expect = 1e-28 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || || || | || |||||||| ||||| || |||||||| || ||||| | Sbjct 430949 ACGCAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGGGTGCGGCC 431008 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||| ||||| |||| |||||||||||| | || | | |||||| Sbjct 431009 ATCCTCGAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATACCCTCCTT 431068 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | | | ||||||||||| ||||| |||| |||| Sbjct 431069 GTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGCTCGACTCCACCTCCAGGGTGA 431127 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAAC 46581 | || ||||| || || || || || Sbjct 431128 TAGTCTTGCCGGTGAGGGTCTTGAC 431152 Score = 138 bits (152), Expect = 1e-27 Identities = 149/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | || |||||| ||||| || |||||||| || ||||| | Sbjct 431234 ACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGCGTGCGACC 431293 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| ||||| ||||||||||||||||| | || | | |||||| Sbjct 431294 GTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATACCCTCCTT 431353 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | | | ||||||||||| ||||| || | |||| Sbjct 431354 GTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGA 431412 Query 46557 TGGTTTTGCCCGTCA 46571 | || ||||| |||| Sbjct 431413 TAGTCTTGCCGGTCA 431427 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||| |||| |||||| || ||||||||||| || | ||||| | || || Sbjct 430728 ACAAGGTGCAGTGTAGACTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCC 430787 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| || | ||||||||||| | || | | |||||||||| | Sbjct 430788 AGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 430847 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || ||| ||| | | | | || || |||||| || || | || ||||| || Sbjct 430848 ATTTTCGACTTCACGTTATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGTCTTT 430907 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || || || || || || |||||| Sbjct 430908 CCGGTGAGGGTCTTGACGAAAATCTGCATT 430937 >seq3 Length=4355815 Score = 111 bits (122), Expect = 2e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| |||||||| | || ||||||||||| || ||||| | Sbjct 2043491 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 2043550 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||||||||| | || | | |||||||||| ||||| ||||| ||| | Sbjct 2043551 TAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTG 2043609 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||||||||| || || || | || ||||| || |||||||| || || || Sbjct 2043610 TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 2043669 Query 46583 AAG 46585 ||| Sbjct 2043670 AAG 2043672 >seq1 Length=6618042 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| ||||| || || || ||||| || Sbjct 1741409 CGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCG 1741350 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || ||||| |||| ||||||||||| | || | | ||||||| Sbjct 1741349 TCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTG 1741290 Query 46499 TC 46500 || Sbjct 1741289 TC 1741288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238166839160