Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2 176 5e-39
seq3 109 5e-19
seq1 98.7 1e-15
>seq2
Length=4789688
Score = 176 bits (194), Expect = 5e-39
Identities = 205/276 (74%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||| ||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 2860051 GTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAA 2860110
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|| || ||||| || |||||| ||||| || || ||| ||||| ||||| ||
Sbjct 2860111 ACCATAGAAGCAACGAGCCTCGGGGACCTGGACCTCCCCGCTGAAGCGCTCCACCAGGTT 2860170
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||||||| |||||| |||||||| ||||| || ||||| |||||| | |||
Sbjct 2860171 TTCGTTGACGATTCCGTCGGACGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTAGCG 2860230
Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | ||||||| ||| | ||||||| | ||||||||||||||| | ||||||
Sbjct 2860231 CTCATCATCGTTCAGGCGGTTGTTCCAGTCGTGAAGGTCCTTGGACAGGTCAATCTCCTC 2860290
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || |||||||| || ||||||||
Sbjct 2860291 TGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 2860326
Score = 136 bits (150), Expect = 4e-27
Identities = 262/384 (68%), Gaps = 2/384 (1%)
Strand=Plus/Plus
Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725
||| || || ||||| |||| | |||||||| ||| || | || | ||||| ||
Sbjct 2859498 CATGAAGTCGAAGGGATTGGTGGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACGAGAAG 2859557
Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGAC 132784
| ||| || |||||||||||||| || ||||| | || || | | | || |||||
Sbjct 2859558 TCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATG-CCAAGCAGGT 2859616
Query 132785 GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTT 132844
|| ||||| || || || || || |||||||| ||||| |||||||||| ||| |
Sbjct 2859617 TGACGGGCAGAGCATCCGTCAGGAACTCCTGCTCGATCGCGACGGCGTCGGTGATGATGT 2859676
Query 132845 CCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGT 132904
| || | || ||| || || || | || ||||| || ||||||||||
Sbjct 2859677 TCTGGACAATCTCCTTGCTAGGGCGGTGGTTGAGGTGGGAGAACAGCAGACAAGCAAAGT 2859736
Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964
|| |||| ||||| || | || || || |||||| ||| || | || ||||| |
Sbjct 2859737 CGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCA 2859796
Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024
| || || || || ||||| || || | || || ||| || ||||||| |||||| |
Sbjct 2859797 GACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCGGAGAAGAAGATGCCCTCCA 2859856
Query 133025 CGGCCGCGAAAGCCACCAGGCGCT 133048
| || ||||| || || || ||||
Sbjct 2859857 CAGCGGCGAAGGCAACGAGACGCT 2859880
>seq3
Length=4355815
Score = 109 bits (120), Expect = 5e-19
Identities = 135/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| ||||||||||| | | ||||| | |
Sbjct 2043671 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGCGACACCATC 2043612
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || | || || | ||||| ||||| || ||| | ||||| ||||| ||
Sbjct 2043611 GACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCT 2043553
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| || || ||||| || || | ||||| || | ||||||||||||||| ||
Sbjct 2043552 TATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCAGAA 2043493
Query 38432 GG 38433
||
Sbjct 2043492 GG 2043491
>seq1
Length=6618042
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| || ||| | ||||| ||||| || || | ||| || || ||||||||
Sbjct 1741288 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAG 1741347
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| ||||||||| || ||||||||||| ||||| |||| || || ||||||||
Sbjct 1741348 GACGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTG 1741407
Query 38457 CG 38458
||
Sbjct 1741408 CG 1741409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172593678720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |