Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq3 109 5e-19 seq1 98.7 1e-15 >seq2 Length=4789688 Score = 176 bits (194), Expect = 5e-39 Identities = 205/276 (74%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| || || | || ||||| | ||||||||| ||| || || Sbjct 2860051 GTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAA 2860110 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || |||||| ||||| || || ||| ||||| ||||| || Sbjct 2860111 ACCATAGAAGCAACGAGCCTCGGGGACCTGGACCTCCCCGCTGAAGCGCTCCACCAGGTT 2860170 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||| |||||| |||||||| ||||| || ||||| |||||| | ||| Sbjct 2860171 TTCGTTGACGATTCCGTCGGACGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTAGCG 2860230 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | ||||||| ||| | ||||||| | ||||||||||||||| | |||||| Sbjct 2860231 CTCATCATCGTTCAGGCGGTTGTTCCAGTCGTGAAGGTCCTTGGACAGGTCAATCTCCTC 2860290 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||||| || |||||||| Sbjct 2860291 TGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 2860326 Score = 136 bits (150), Expect = 4e-27 Identities = 262/384 (68%), Gaps = 2/384 (1%) Strand=Plus/Plus Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725 ||| || || ||||| |||| | |||||||| ||| || | || | ||||| || Sbjct 2859498 CATGAAGTCGAAGGGATTGGTGGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACGAGAAG 2859557 Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGAC 132784 | ||| || |||||||||||||| || ||||| | || || | | | || ||||| Sbjct 2859558 TCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATG-CCAAGCAGGT 2859616 Query 132785 GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTT 132844 || ||||| || || || || || |||||||| ||||| |||||||||| ||| | Sbjct 2859617 TGACGGGCAGAGCATCCGTCAGGAACTCCTGCTCGATCGCGACGGCGTCGGTGATGATGT 2859676 Query 132845 CCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGT 132904 | || | || ||| || || || | || ||||| || |||||||||| Sbjct 2859677 TCTGGACAATCTCCTTGCTAGGGCGGTGGTTGAGGTGGGAGAACAGCAGACAAGCAAAGT 2859736 Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964 || |||| ||||| || | || || || |||||| ||| || | || ||||| | Sbjct 2859737 CGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCA 2859796 Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024 | || || || || ||||| || || | || || ||| || ||||||| |||||| | Sbjct 2859797 GACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCGGAGAAGAAGATGCCCTCCA 2859856 Query 133025 CGGCCGCGAAAGCCACCAGGCGCT 133048 | || ||||| || || || |||| Sbjct 2859857 CAGCGGCGAAGGCAACGAGACGCT 2859880 >seq3 Length=4355815 Score = 109 bits (120), Expect = 5e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| ||||||||||| | | ||||| | | Sbjct 2043671 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGCGACACCATC 2043612 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || | || || | ||||| ||||| || ||| | ||||| ||||| || Sbjct 2043611 GACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCT 2043553 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| || || ||||| || || | ||||| || | ||||||||||||||| || Sbjct 2043552 TATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCAGAA 2043493 Query 38432 GG 38433 || Sbjct 2043492 GG 2043491 >seq1 Length=6618042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| | ||||| ||||| || || | ||| || || |||||||| Sbjct 1741288 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAG 1741347 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||||||| || ||||||||||| ||||| |||| || || |||||||| Sbjct 1741348 GACGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTG 1741407 Query 38457 CG 38458 || Sbjct 1741408 CG 1741409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172593678720