Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-30 seq1 145 9e-30 seq4 93.3 5e-14 >seq2 Length=4789688 Score = 147 bits (162), Expect = 3e-30 Identities = 172/227 (76%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGT 102165 ||||||| || || | ||||| || || ||||| || |||||| || | |||| ||| Sbjct 2859952 CAGTTCCTTGCATCCGCAAGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGT 2859893 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | |||||||| |||| ||| | || || || ||| ||||| ||||||||||| | Sbjct 2859892 CCA---CCTTTGCTCAGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCG 2859836 Query 102226 GTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 | ||||| ||| | || | ||||| |||||||| ||||| ||||| |||||| |||| Sbjct 2859835 GCTCCTT-TGCTTCGATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTC 2859777 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| ||||||||||| ||||| || ||| || ||||| Sbjct 2859776 TCCAACGAGCTGATCTCTCGTGATGAGGGTCTGCACACCGACTTTGC 2859730 >seq1 Length=6618042 Score = 145 bits (160), Expect = 9e-30 Identities = 410/623 (66%), Gaps = 10/623 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || || | || ||||| || || || ||||| || Sbjct 2616215 CCCCAGCACATGATTATGCGTGTTGCTGTTGGAATCCACGGTGATGACATTGAGAAGGTC 2616156 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || |||||||| | ||| |||| || || | |||||||| || Sbjct 2616155 ATTGAGACGTACAACCTGATGTCCCAGAAGTAC-TTCACTCATGCTTCTCCAACCCTGTT 2616097 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || || || | || || ||||| | | | ||||| || Sbjct 2616096 CAACGCCGGTACTCCTCAGCCGCAGCTCGCCTCCTGCTTCCTCGTCGACATGAAGGAAGA 2616037 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || ||||||| |||||||| ||||| | ||||||||| ||||| Sbjct 2616036 CAGCATTGAGGGTATTTACGACACTCTCAAGACTTGTGCGCTGATCTCAAAGACCGCTGG 2615977 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 |||||| || | ||||||| | || | |||| | | ||| || | ||||| Sbjct 2615976 TGGTATTGGTCTCAACATCCACCGTATCCGCGCCACC--GGCTCCTACATCTCTGGTACC 2615919 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| || | || ||| | || ||||| || || || ||| ||| || | || Sbjct 2615918 AATGGATCTTCCAACGGAATTGTCCCCATGCTCCGGGTCTTCAACAACACTGCCAGATAC 2615859 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || |||| | || ||| || || |||| |||| || ||||| |||||| Sbjct 2615858 GTCGACCAGGGAGGAAACAAGCGCCCTGGTGCTTTCGCTATCTACCTGGAGCCTTGGCAC 2615799 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 | |||||| | || ||| | || | || ||||| || | || || | | Sbjct 2615798 TCTGATATCTTCGACTTCTTGGATCTTCGCAAGAACCACGGCAAGGAAGAAGTTAGAGCT 2615739 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || |||||||||| ||||||||||| ||| || |||||||||||| | || |||| || Sbjct 2615738 CGTGATCTCTTCTACGCTCTCTGGACTCCGGACCTCTTCATGAAGCGTGTCGAGGCGAAC 2615679 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 || | ||| | || || || || || |||| || || ||| | |||| || ||| Sbjct 2615678 GGTGACTGGACACTGTTCTGCCCCAACGAGGCTCCTGGCCTCGCTGATGTGTACGGCGAG 2615619 Query 112206 GAGTTTGAAGCCCTCTA-CACAA 112227 ||||| || || || || ||||| Sbjct 2615618 GAGTTCGAGGCTCTTTACCACAA 2615596 >seq4 Length=3953819 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 176735 CCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGA 176794 |||||||||||| || |||| ||| ||| ||||||||||| ||| |||| ||||| Sbjct 3098124 CCCTTGATGTGGCTTCCATCGTGATCCTGATCGGTCATGATCATAAGATGACCGTACCGC 3098183 Query 176795 AGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCG 176854 || | ||| ||| ||||| || |||||||| | || ||||||| || Sbjct 3098184 AGACCTTTGGTATCGGTATATTCCTTCTTATGCTGAAGACCAAGGAAGTTCTTGATATTC 3098243 Query 176855 TTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTC 176914 | || |||||||| | || || || ||||||||||||||| || ||| Sbjct 3098244 TGGATTTCTTGGTTCTTGGAGATTTGATCGATAGAGGCATCACGAACGTTGAGCAGCTTT 3098303 Query 176915 CCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCG 176974 || || | ||| ||||||||| | |||| | || ||||| | || || | || Sbjct 3098304 CCTCGTAAAGGAAAGACACCGAACAGATCAGGTCCGACCACTGCTCTCCCTGCCATTGCC 3098363 Query 176975 AGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACA 177015 | ||| || |||||||| ||||| | |||||| || || Sbjct 3098364 AAACCTTTGGCTGAATCACCTTCTGTGAGGATGAGGGTGCA 3098404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742143943760