Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 165 2e-35 >seq2 Length=4789688 Score = 165 bits (182), Expect = 2e-35 Identities = 353/519 (68%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || || ||||||||| || Sbjct 2859438 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGGACAGCGAGATGTTGTC 2859497 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| |||||| |||| | ||| || | | ||| ||| | | || Sbjct 2859498 CATGAAGTCGAAGGGATTGGTGGCGTTGTAGTACTTCTTGTT--GCCAAGAGCCACGAGA 2859555 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || | || |||||| |||||||||| | ||||||| || ||||||||| | ||| Sbjct 2859556 AGTCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCAAGCAGG 2859615 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||||||| ||| | || || ||||||| ||| ||| ||||| || | || Sbjct 2859616 TTGACGGGCAGAGCATCCGTCAGGAACTCCTGCTCGATCGCGACGGCGTCGGTGATGATG 2859675 Query 48077 TGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 | || || || || || | | |||| ||||| || | |||| || Sbjct 2859676 TTCTGGACAATCTCCTTGCTAGGGCGGTGGTTG---AGGTG---GGAGAACAGCAGACAA 2859729 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| |||||| || || || || ||| ||| ||||||||||| ||||||| Sbjct 2859730 GCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGACCA 2859789 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || || |||||||| || | || || ||||| |||||||||||| Sbjct 2859790 GGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCGGAGAAGAAGATG 2859849 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-CTGAGAT 48312 |||||||| || ||||| || ||| | || | || | | | ||||| |||| || Sbjct 2859850 CCCTCCACAGCGGCGAAGGCAACGAGACGCTGAGCAAAGGTGGACTCCTTGTCCTGA-AT 2859908 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| | ||||| || |||||||| |||||| || Sbjct 2859909 CCACTTGATGGCCCACTCAGCCTTCTTGCGGATGCAAGG 2859947 Score = 87.8 bits (96), Expect = 3e-12 Identities = 171/251 (68%), Gaps = 5/251 (2%) Strand=Plus/Plus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||| || |||||| | ||||| | Sbjct 2860077 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAACGAGCCTCGGGGA 2860136 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || || | ||| | ||||| ||| || || ||||| || || || || || | Sbjct 2860137 CCTGGACCTCCCCGCTGAAGCGCTCCACCAGGTTTTCGTTGACGATTCCGTCGGACGCGG 2860196 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCA----TTC 48604 | |||||||| ||||| || | ||| | |||||| | | | | || || ||| Sbjct 2860197 CGAAGAAGGCGAGGACGTGGGAGATGAAGTAGCGCTCATCATCGTTCAG-GCGGTTGTTC 2860255 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | || | ||| ||| |||||| | || || ||||||||||||| || || Sbjct 2860256 CAGTCGTGAAGGTCCTTGGACAGGTCAATCTCCTCTGCAGTCCAGAAGGAGGCCTCGGCC 2860315 Query 48665 TTTTTGTACAT 48675 || |||||||| Sbjct 2860316 TTCTTGTACAT 2860326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532415742720