Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2 150 3e-31
seq1 147 4e-30
>seq2
Length=4789688
Score = 150 bits (166), Expect = 3e-31
Identities = 333/503 (66%), Gaps = 13/503 (3%)
Strand=Plus/Minus
Query 25824 GAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883
|||||| ||||||||| |||||||| | | || | || |||| |||| ||
Sbjct 2859933 GAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGTCCACCTTTGCTCAGCGTCT 2859874
Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943
|| ||||| || ||||||||||||||||| ||| ||| || ||||| | ||||||||
Sbjct 2859873 CGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTTTGCTTCGATCTTCTG 2859814
Query 25944 GCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003
||| ||| || || ||||| || || ||| ||||||||||| ||| | ||
Sbjct 2859813 GCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCTCGTGA 2859754
Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063
|||||||| |||| || ||||| || ||||| | | | |||| | |||| ||
Sbjct 2859753 TGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTC---CCACCTCAACCACCGCCC 2859697
Query 26064 TTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCN 26123
| | |||| ||| | | ||||||| || || || | ||||||| ||||||| |
Sbjct 2859696 TAGCAAGGAGATTGTCCAGAACATCATCACCGACGCCGTCGCGATCGAGCAGGAGTTCCT 2859637
Query 26124 NNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACAT 26183
| ||||||||| || |||||| |||| |||||
Sbjct 2859636 GACGGATGCTCTGCCCGTCAACCTGCTTGGCATGAACGCCAAGCTCATGTGCCAGTACAT 2859577
Query 26184 TGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTAC 26240
|||| || || |||| || || ||| | ||| | | ||| ||||| ||
Sbjct 2859576 CGAGTTCGTCGCTGACCGACTTCTCGTGGCTCTTGGCA---ACAAGAAGTACTACA--AC 2859522
Query 26241 GC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298
|| | || || |||||||| ||||| ||||| ||| || || ||||||||||||||
Sbjct 2859521 GCCACCAATCCCTTCGACTTCATGGACAACATCTCGCTGTCCGGCAAGACCAACTTCTTC 2859462
Query 26299 GAAAAGAGGGTCGGCGACTATCA 26321
|| ||| | ||||| ||||| ||
Sbjct 2859461 GAGAAGCGTGTCGGTGACTACCA 2859439
>seq1
Length=6618042
Score = 147 bits (162), Expect = 4e-30
Identities = 390/589 (66%), Gaps = 10/589 (2%)
Strand=Plus/Plus
Query 221941 GGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000
|||| ||||| | | |||| || |||||| | || | ||||| ||| | | |||
Sbjct 2615600 GGTAAAGAGCCT--CGAACTCCTCGCCGTACACATCAGCGAGGCCAGGAGCCTCGTTGGG 2615657
Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060
|| | ||| |||||| ||| | | ||| | || ||||||||||||||| ||||
Sbjct 2615658 GCAGAACAGTGTCCAGTCACCGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGAGTCCA 2615717
Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120
|| || | |||||||| | | | || ||| ||||| ||| || | |||||
Sbjct 2615718 GAGAGCGTAGAAGAGATCACGAGCTCTAACTTCTTCCTTGCCGTGGTTCTTGCGAAGATC 2615777
Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180
||| || || || || |||| |||||| |||||||| |||| || | ||| || || ||
Sbjct 2615778 CAAGAAGTCGAAGATATCAGAGTGCCAAGGCTCCAGGTAGATAGCGAAAGCACCAGGGCG 2615837
Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTA 222239
|||||| || ||||| || || || | || | |||||||| || || | || |
Sbjct 2615838 CTTGTTTCCTCCCTGGTCGACGTATCTGGC-AGTGTTGTTGAAGACCCGGAGCATGGGGA 2615896
Query 222240 CCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC 222299
| | ||||||||| || ||||| || ||||| | ||| ||| | || |||
Sbjct 2615897 CAATTCCGTTGGAAGATCCATTGGTACCAGAGATGTAGGAGCCGGTGGCGC---GGATAC 2615953
Query 222300 --TGGCAGACATG-CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356
||| | | || |||||||| ||| || ||||||| || || |||||||||
Sbjct 2615954 GGTGGATGTTGAGACCAATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAG 2616013
Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416
|||| || ||||| || ||| ||||| | || | || || || || | | ||
Sbjct 2616014 TGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCT 2616073
Query 222417 GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG 222476
| | | | | || |||||| ||||| || ||| || || || ||||| | |
Sbjct 2616074 GCGGCTGAGGAGTACCGGCGTTGAACAGGGTTGGAGAAGCATGAGTGAAGTACTTCTGGG 2616133
Query 222477 ACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525
||||||| | ||||||||| | ||| | | |||| || ||||| ||
Sbjct 2616134 ACATCAGGTTGTACGTCTCAATGACCTTCTCAATGTCATCACCGTGGAT 2616182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844416851520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |