Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 136 5e-26 seq1 132 6e-25 seq6 87.8 2e-11 >seq2 Length=4789688 Score = 136 bits (150), Expect = 5e-26 Identities = 227/323 (70%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| |||||||| Sbjct 2859433 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGGACAGCGAGATG 2859492 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||| | ||| || |||| | ||||||| ||| | | || || | | || Sbjct 2859493 TTGTCCATGAAGTCGAAGGGATTGGTGGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACG 2859552 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||| ||||| ||||||||||||||||||||||| |||||||||||| | Sbjct 2859553 AGAAGTCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCAAGC 2859612 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | || ||| ||||| | ||||||| ||||||| ||| |||| Sbjct 2859613 AGGTTGACGGGCAGAGCATCCGTCAGGAACTCCTGCTCGATCGCGACGGCGTCGGTGATG 2859672 Query 868931 ATCTGCCTGGGCA--CGTCGGCCGAGGGC--TTGTTGACGAGCATCGTGTAGAGCAGGCA 868986 || | |||| || | | | ||||| | ||||| | | | | | ||||| || Sbjct 2859673 ATGT-TCTGGACAATCTCCTTGCTAGGGCGGTGGTTGAGGTG---GGAGAACAGCAGACA 2859728 Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008 ||||||||| ||||| ||||| Sbjct 2859729 AGCAAAGTCGGTGTGCAGACCCT 2859751 Score = 118 bits (130), Expect = 1e-20 Identities = 178/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||| || || ||| | |||| | || ||| Sbjct 2860082 GAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCAACGAGCCTCGGGGACCTGG 2860141 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||| |||| || | ||||||| ||| ||||| |||||| |||||||| Sbjct 2860142 ACCTCCCCGCTGAAGCGCTCCACCAGGTTTTCGTTGACGATTCCGTCGGACGCGGCGAAG 2860201 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAGTGG 869809 || || |||||||| ||| |||| |||||| || ||| | | ||| ||||| | Sbjct 2860202 AAGGCGAGGACGTGGGAGATGAAGTAGCGCTCATCATCGTTCAGGCGGTTGTTCCAGTCG 2860261 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 ||| | ||||| | |||||| || ||||||| |||||||||||||| ||| Sbjct 2860262 TGAAGGTCCTTGGACAGGTCAATCTCCTCTGCAGTCCAGAAGGAGGCCTCGGCCTTCTTG 2860321 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 2860322 TACATCTGCCA 2860332 Score = 111 bits (122), Expect = 2e-18 Identities = 146/196 (74%), Gaps = 11/196 (6%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||||| |||||| |||| ||| || ||||| || || ||||| Sbjct 2859747 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCACGCTT 2859806 Query 869239 CTTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||| ||||| ||||| | ||| || ||| ||||| ||||||||||| || ||||| | Sbjct 2859807 CTTCAGCCAGAAGATCGAAGCA-AAGGAGCCGGAGAAGAAGATGCCCTCCACAGCGGCGA 2859865 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT--TG-ATCCACTTCATCG 869354 || | | ||| |||| ||||||||| || |||||||| || |||||||| || | Sbjct 2859866 AGGCAACGAGACGCTGAGCAAAGGTG--GA----CTCCTTGTCCTGAATCCACTTGATGG 2859919 Query 869355 CCCAGTCGGCCTTTTT 869370 |||| || ||||| || Sbjct 2859920 CCCACTCAGCCTTCTT 2859935 >seq1 Length=6618042 Score = 132 bits (146), Expect = 6e-25 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| | || |||| ||| ||||| ||||||||||| || | |||||||| Sbjct 2615850 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATGGGGACAATTCCGTTGGA 2615909 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || ||||| || | | ||||| ||||| |||||| | ||| | | || Sbjct 2615910 AGATCCATTGGTACCAGAGATGTAGGAGCCGGTGGCGCGGATACGGTGGATGTTGAGACC 2615969 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || || | ||| ||||| ||||| || ||||| |||||||| || ||||| Sbjct 2615970 AATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAGTGTCGTAAATACCCTC 2616029 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| ||||| ||||| || | | ||||| || | || || Sbjct 2616030 AATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCTGCGGCTGAGGAGTACC 2616089 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 ||||||||| || || || Sbjct 2616090 GGCGTTGAACAGGGTTGG 2616107 Score = 118 bits (130), Expect = 1e-20 Identities = 128/167 (77%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| || |||| ||| | || || ||| | || || || | || || |||| Sbjct 3604712 GTGGGACCAGAAGTTCATGC-AGGTTGACCAGGAGATGCTGTTCGAAATCATTCTGGCCG 3604654 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| || |||||| | || || || | || |||||| | || || ||||||| Sbjct 3604653 CCAACTACCTTGATATCAAGGCCCTCCTTGACGTCGGCTGCAAGACCGTTGCGAACATGA 3604594 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||| ||||||||||| |||||||| || |||||| || Sbjct 3604593 TCAAGGGCAAGTCCCCCGAGGAGATTCGCAAGACTTTCAACATCCAG 3604547 Score = 91.5 bits (100), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 19041 CAAGA-GGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCT 19099 ||||| ||||||||| || || || ||||| ||||| | || || || | || | Sbjct 2912017 CAAGAAGGACAGCATTGGAGGAACTGTGACCTGCGTTATAAGGAATGTTCCTGTTGGATT 2911958 Query 19100 CGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCC 19159 |||||||| ||||| || ||| | || ||| ||| ||||| |||||||| || || Sbjct 2911957 GGGCGAGCCTTGCTTCGATAAGCTTGAAGCCAAGCTGGCCCATGCCATGCTCAGCATTCC 2911898 Query 19160 GGCCACCAAGGGATTCGAGATTGGC 19184 ||||||||| ||||||||||| ||| Sbjct 2911897 GGCCACCAAAGGATTCGAGATCGGC 2911873 >seq6 Length=3125892 Score = 87.8 bits (96), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 450787 CGCGTTTGGCCGATGCGGTGCACGCGGTCGACGGCCTGCGCCTCGGCAAACGGATTGTAG 450846 ||||| ||||| | |||||||||||||| ||||||||||| | || ||| ||||| Sbjct 642459 CGCGTCTGGCCCAGACGGTGCACGCGGTCCACGGCCTGCGCGACCGCTGCCGGGTTGTAC 642400 Query 450847 TGCGCGTCCATGAGCAGCACATAGTTGGCGCACACGAGGTTGAGGCCGACGCTGCCCACG 450906 |||| ||||||| || | |||| ||||||||||||||||| ||| || Sbjct 642399 TGCGGCTCCATGACGTAAACCTTCGAGGCGGCGGTGAGGTTGAGGCCGACGCCGCCGGCG 642340 Query 450907 CCGATGGTCATCAGGAGG 450924 |||||||| ||||||| Sbjct 642339 CCGATGGTGGCCAGGAGG 642322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136491865461