Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 8e-16 seq7 86.0 5e-12 >seq8 Length=1356063 Score = 98.7 bits (108), Expect = 8e-16 Identities = 184/270 (68%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 34345 CACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGG 34404 |||| |||||||||| |||||| ||||| || |||||| | ||| || || ||| Sbjct 449630 CACAGCACAAACTTGGCGATGAATCCATCGAGGTAGTCCTGAAGCTTGGGGGCATCATGG 449689 Query 34405 GAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGC----GCGCCCAG 34460 | ||||||| || | || |||| | | | |||||| || || ||||| Sbjct 449690 GCACCGTTGATAATCCAGCGGTCGTCGGT----TGGCTTTGCGTTGGCCTGTGCACCCAG 449745 Query 34461 CTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTC 34520 ||| | ||||||||||| || ||| | || || | || | || ||| || Sbjct 449746 CTCAAAACCGAAGTACTTGATCACGTACGCTGGAGGCCGGCTGAGAGACTGGGCAATCGA 449805 Query 34521 GGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGAT 34580 | || |||||||| ||| ||||||||||| |||||||| ||||||| ||||| ||| Sbjct 449806 GTTCAGGTTGACGACGACGGTCTTGATGCCATTGCCCTTGCCTTCGATCTTGGACTGGAT 449865 Query 34581 GCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 | ||| ||||| |||||||| | ||| Sbjct 449866 CTTCTCCATCTTGTAACGGTAGAAGGGGTC 449895 >seq7 Length=1958609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 |||||| || || ||||| || | ||||| || ||||||||| ||||| || | | | Sbjct 430937 AATGCAGATTTTCGTCAAGACCCTCACCGGAAAGACCATTACCCTCGAAGTCGAATCGTC 430878 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | ||||| ||| | || || ||| || ||||| || || | ||| ||| | Sbjct 430877 A-GATACCATCGATAACGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCGGACC 430819 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || | ||||| | || ||||| ||||||||||||| | | || || | || |||| Sbjct 430818 AGCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCTTGTCAGACTACA 430759 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 | ||||| || || ||||| ||||| | || | | ||||| || |||| Sbjct 430758 ATATTCAGAAGGAGTCTACACTGCACCTTGTCCTCCGCCTGCGTGGAGGAA 430708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841433960269