Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 127 3e-23 seq1 122 1e-21 >seq2 Length=4789688 Score = 127 bits (140), Expect = 3e-23 Identities = 178/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| |||||| |||||||||||||| | Sbjct 2859425 TGACACCGGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGGACA 2859484 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| ||||| | ||| || |||| | ||||| ||||| | || | Sbjct 2859485 GCGAGATGTTGTCCATGAAGTCGAAGGGATTGGTGGCGTTGTAGTACTTCTTGTTGCCAA 2859544 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | || || ||||| |||||||| || ||||||||||||||||| |||||||| Sbjct 2859545 GAGCCACGAGAAGTCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCA 2859604 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || |||||||| | || | | ||||| | ||||||| ||||||| | Sbjct 2859605 TGCCAAGCAGGTTGACGGGCAGAGCATCCGTCAGGAACTCCTGCTCGATCGCGACGGCGT 2859664 Query 794131 CGATGATGAT 794140 || ||||||| Sbjct 2859665 CGGTGATGAT 2859674 Score = 104 bits (114), Expect = 4e-16 Identities = 141/195 (72%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||||| |||||| ||| ||| || ||||| || || ||||| Sbjct 2859747 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCACGCTT 2859806 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| ||||| | | || ||| ||||| ||||||||||| || ||||| || Sbjct 2859807 CTTCAGCCAGAAGATCGAAGCAAAGGAGCCGGAGAAGAAGATGCCCTCCACAGCGGCGAA 2859866 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT--TG-ATCCACTTCATCGC 794516 | | ||||| |||| ||||| || | ||| |||| || |||||||| || || Sbjct 2859867 GGCAACGAGACGCTGAGCAAAGGT------GGACTCCTTGTCCTGAATCCACTTGATGGC 2859920 Query 794517 CCACTCTGCCTTTTT 794531 |||||| ||||| || Sbjct 2859921 CCACTCAGCCTTCTT 2859935 Score = 91.5 bits (100), Expect = 2e-12 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643 || ||||||| ||||||||| ||||| || ||||||||||| ||||||||||| || || Sbjct 2860040 GGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATC 2860099 Query 794644 GCGATCTGGAAGCCATAAAAGCA 794666 ||||||||| ||||| ||||| Sbjct 2860100 ATGATCTGGAAACCATAGAAGCA 2860122 >seq1 Length=6618042 Score = 122 bits (134), Expect = 1e-21 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 2035641 ATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTG 2035700 || || |||||||||||||| || |||||| ||||||| || | || ||||||||||| Sbjct 3604663 ATTCTGGCCGCCAACTACCTTGATATCAAGGCCCTCCTTGACGTCGGCTGCAAGACCGTT 3604604 Query 2035701 GCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 || ||| | |||||||||||||| |||||||| || |||||||| || |||||| || Sbjct 3604603 GCGAACATGATCAAGGGCAAGTCCCCCGAGGAGATTCGCAAGACTTTCAACATCCAG 3604547 Score = 105 bits (116), Expect = 1e-16 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || | || |||| ||| ||||| ||||||||||| |||| |||||||| Sbjct 2615850 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATGGGGACAATTCCGTTGGA 2615909 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 || ||||| || | | ||||| ||| | |||||| | ||| | | || Sbjct 2615910 AGATCCATTGGTACCAGAGATGTAGGAGCCGGTGGCGCGGATACGGTGGATGTTGAGACC 2615969 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || || | ||| ||||| ||||| || | || || || ||||| || ||||| Sbjct 2615970 AATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAGTGTCGTAAATACCCTC 2616029 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| || | | ||||| | | || || Sbjct 2616030 AATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCTGCGGCTGAGGAGTACC 2616089 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||| ||||| || || || Sbjct 2616090 GGCGTTGAACAGGGTTGG 2616107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242889639487