Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7 134 9e-27 seq1 100 2e-16 seq3 95.1 8e-15 >seq7 Length=1958609 Score = 134 bits (148), Expect = 9e-27 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | || | |||||| ||||| | |||||||||||||| ||||||||||| | Sbjct 430936 TTCCACCACGCAGACGCAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGG 430995 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| |||| |||| || || ||||| || ||||||||||| || ||||||||| | | Sbjct 430996 AAAGGGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGG 431055 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || |||||| | || | || | | ||| | Sbjct 431056 GGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTCGACTCCA 431115 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| || ||||| || ||||||||||| || Sbjct 431116 CCTCCAGGGTGATAGTCTTGCCGGTGAGGGTCTTGAC 431152 Score = 125 bits (138), Expect = 5e-24 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | || | ||||| ||||| | || |||||||||||| || ||||| | Sbjct 430708 TTCCTCCACGCAGGCGGAGGACAAGGTGCAGTGTAGACTCCTTCTGAATATTGTAGTCTG 430767 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | |||| |||| ||||| ||||| || |||||||| || || |||||||| | | Sbjct 430768 ACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCCGGGG 430827 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCC 34924 | | ||||||||||| | ||||| || || | ||||||| || | Sbjct 430828 GAATACCCTCCTTGTCCTGGATTTTCGACTTCAC----GTTATCGATGGTATCTGACGAT 430883 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||| ||||||||||| ||||||||||| || || |||||||| Sbjct 430884 TCGACTTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 430936 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || || |||||||| | |||||||||||||| || || ||||| || || |||| | Sbjct 430494 CTGAGAACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAGAGCGTGCGACCG 430553 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||| || |||||||||| || ||||||||| | || | ||||||||| Sbjct 430554 TCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTG 430613 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || ||| | || | ||| | |||||| || | || ||| Sbjct 430614 TCCTGGATCTTGCTCTTCACGTTGTCGATTGTGTCAGAGCTCTCGACCTCCAGCGTAATG 430673 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || || ||||| || ||||||||||| Sbjct 430674 GTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 430708 Score = 105 bits (116), Expect = 4e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| |||| ||||||||| ||||||||||| || || |||| | || Sbjct 431238 AGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGCGTGCGACCGTCC 431297 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| || ||||||||| | || | ||||||||||| Sbjct 431298 TCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 431357 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | | ||| || |||| ||| || ||| Sbjct 431358 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTC 431417 Query 34946 TTTCCCGT 34953 || || || Sbjct 431418 TTGCCGGT 431425 >seq1 Length=6618042 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| || ||||| ||| |||| | || Sbjct 1741407 CAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTC 1741348 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 1741347 CTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 1741288 >seq3 Length=4355815 Score = 95.1 bits (104), Expect = 8e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || |||| |||| || || ||||| || ||||||| Sbjct 2043491 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 2043550 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 | || || |||||||| | || | ||||||||||| | || || |||||| Sbjct 2043551 TAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGT 2043610 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | || | | |||||| || | ||| |||||||| ||||| |||||||| || | Sbjct 2043611 CGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 2043670 Query 34968 AG 34969 || Sbjct 2043671 AG 2043672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692669010427