Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 >seq2 Length=4789688 Score = 109 bits (120), Expect = 5e-19 Identities = 335/514 (65%), Gaps = 7/514 (1%) Strand=Plus/Minus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 || || ||| | ||||| ||||| |||||||||| |||||||| || | || || Sbjct 2859950 GTTCCTTGCATCCGCAAGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGTCC 2859891 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 || | || |||| | || || ||||| || || ||| | || || || ||| Sbjct 2859890 ACCTTTGCTCAGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCC 2859831 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 ||||| | || || | | || | || | ||||| || || || ||| ||| Sbjct 2859830 TTTGCTTCGATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAAC 2859771 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGAC 46996 ||| ||||||| || || || || || ||||| |||||||| ||||| || || | Sbjct 2859770 GAGCTGATCTCTCGTGATGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCT----C 2859715 Query 46997 GCGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAG 47056 | | | || | | | ||| | ||| || ||| | | || || || Sbjct 2859714 CCACCTCAACCACCGCCCTAGCAAGGAGATTGTCCAGAACATCATCACCGACGCCGTCGC 2859655 Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116 ||||| ||||||| | || | || ||||||||| | |||| ||||||||||| | Sbjct 2859654 GATCGAGCAGGAGTTCCTGACGGATGCTCTGCCCGTCAACCTGCTTGGCATGAACGCCAA 2859595 Query 47117 GTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC- 47175 | |||||| | || || ||||| || || || || || | ||| || || |||| Sbjct 2859594 GCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGACTTCTCGTGGCTCTTGG-CAACA 2859536 Query 47176 CGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCA 47235 ||| || | || || ||||| || || || ||| ||||||| ||||| |||| Sbjct 2859535 AGAAGTACTACAACGCCACCAATCCCTTCGACTTCATGGACAACATCTCGCTGTCCGGCA 2859476 Query 47236 AAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 | ||||| || |||||||| || ||||| || || Sbjct 2859475 AGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 2859442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611003397880