Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-33 seq1 113 6e-19 >seq2 Length=4789688 Score = 161 bits (178), Expect = 1e-33 Identities = 218/299 (73%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||||||||| ||||| || |||||| | |||| Sbjct 2860336 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGACC 2860278 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | ||||| ||| ||| ||| || |||||| | |||||| Sbjct 2860277 TGTCCAAGGACCTTCACGACTGGAACAACCGCCTGAACGATGATGAGCGCTACTTCATCT 2860218 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| || |||||| ||| || ||||| ||| ||||||| | Sbjct 2860217 CCCACGTCCTCGCCTTCTT-CGCCGCGTCCGACGGAATCGTCAACGAAAACCTGGTGGAG 2860159 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| |||| || || || ||||||||| Sbjct 2860158 CGCTTCAGCGGGGAGGTCCAGGTCCCCGAGGCTCGTTGCTTCTATGGTTTCCAGATCATG 2860099 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || |||||||| || || || ||||||||| ||||||| || Sbjct 2860098 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCC 2860040 Score = 120 bits (132), Expect = 4e-21 Identities = 185/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| ||||||| ||||||| | ||||| | | || | ||||| || Sbjct 2859674 ATCATCACCGACGCCGTCGCGATCGAGCAGGAGTTCCTGACGGATGCTCTGCCCGTCAAC 2859615 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||||||| |||||||||||||||||| | | || ||||| ||||| | Sbjct 2859614 CTGCTTGGCATGAACGCCA-AGCTCATGTGCCAGTACATCG-AGTTCGTCGCTGACCGAC 2859557 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | |||| ||| || ||| | ||||| ||||| | |||| || ||| | ||| Sbjct 2859556 TTCTCGTGGCTCTTGGCAAC-AAGAAGTACTACAACGCCACCAATCCCTTCGACTTCATG 2859498 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 || |||||||| |||||||||||||| |||||| || || || || ||| Sbjct 2859497 GACAACATCTCGCTGTCCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 2859438 Query 1456762 AAGGCCGGCGTCACCGCCA 1456780 |||||||| |||| |||| Sbjct 2859437 AAGGCCGGTGTCATGGCCA 2859419 Score = 96.9 bits (106), Expect = 5e-14 Identities = 121/158 (77%), Gaps = 11/158 (7%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGAT-CA--ACAAGGAGGGCCTCGACACTTTGCCG 1456179 || ||||| || ||||| || |||||||| || |||||||| || || |||||| Sbjct 2859935 AAGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAG----TCCAC-CTTTGCTC 2859881 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCC 1456237 |||| ||||| | ||| ||||| || ||||||||||| ||||| ||| || ||| | Sbjct 2859880 AGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTT-TGCTTCG 2859822 Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||| |||||||| || || ||||| ||||| Sbjct 2859821 ATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGTCT 2859784 >seq1 Length=6618042 Score = 113 bits (124), Expect = 6e-19 Identities = 200/289 (69%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||| ||| ||| ||||| ||| || | || || || || || ||||| || || | Sbjct 2616137 ATGTCCCAGAAGTACTTCAC-TCATGCTTCTCCAACCCTGTTCAACGCCGGTACTCCTCA 2616079 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 |||||| | || ||||| || | |||||||||| || || ||||| || || Sbjct 2616078 GCCGCAGCTCGCCTCCTGCTTCCTCGTCGACATGAAGGAAGACAGCATTGAGGGTATTTA 2616019 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 ||||| |||||| || ||||| ||||| ||| | || || || || ||| | | Sbjct 2616018 CGACACTCTCAAGACTTGTGCGCTGATCTCAAAGACCGCTGGTGGTATTGGTCTCAACAT 2615959 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||| | |||||| | ||| ||||| | | || ||||| || |||||||| | Sbjct 2615958 CCACCGTATCCGCGCCACCGGCTCCTACATCTCTGGTACCAATGGATCTTCCAACGGAAT 2615899 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||| |||||||| || || || ||| |||| || | |||||||||||| Sbjct 2615898 TGTCCCCATGCTCCGGGTCTTCAACAACACTGCCAGATACGTCGACCAG 2615850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808017089346