Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7 125 6e-24 seq1 89.7 5e-13 seq3 87.8 2e-12 >seq7 Length=1958609 Score = 125 bits (138), Expect = 6e-24 Identities = 179/248 (72%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 35495 ATCATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGA 35554 |||| | ||| || |||||||| | || | |||| || | || |||||||| || Sbjct 430467 ATCAACCCTTAGTTACCACCACGGAGTCTGAGAACCAGGTGGAGAGTGCTCTCCTTCTGG 430526 Query 35555 ATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGC 35614 || ||||| |||| | || || |||| || |||||||| ||||| || ||||| ||| Sbjct 430527 ATATTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGC 430586 Query 35615 TGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGT 35673 |||||||| | || | | |||||||||| |||||| ||||| |||| | | || Sbjct 430587 TGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCA-CGTTGTCGATTGT 430645 Query 35674 GTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATAT 35730 ||| |||| || ||||||| ||| || || || || |||| ||| ||||| || || Sbjct 430646 GTCAGAGCTC---TCGACCTCCAGCGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGAT 430702 Query 35731 CTGCATTC 35738 |||||||| Sbjct 430703 CTGCATTC 430710 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||| || | || |||||| || ||||| || |||| Sbjct 431221 TTCCACCACGGAGACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGG 431280 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || |||| || |||||||| ||||| || ||||| ||||||||||| | | Sbjct 431281 AGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGG 431340 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCC 35686 | | | |||||||||| |||||| ||| | |||| | | ||||||||||| ||| Sbjct 431341 GGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGCTCGACTCC 431399 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCA 35714 ||||| | ||||| || || || |||| Sbjct 431400 ACCTCAAGGGTGATAGTCTTGCCGGTCA 431427 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | || || | || | || |||||||| || ||||| || |||| Sbjct 430936 TTCCACCACGCAGACGCAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGG 430995 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||| || | || || |||||||| || || || |||| ||||||||||| | | Sbjct 430996 AAAGGGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGG 431055 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCC 35686 | | | |||||||||| |||||| ||| | |||| | | ||||||||||| ||| Sbjct 431056 GGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGCTCGACTCC 431114 Query 35687 ACCTCCACCGTGATCGTTTTACCCGT 35712 ||||||| ||||| || || || || Sbjct 431115 ACCTCCAGGGTGATAGTCTTGCCGGT 431140 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| ||||| || | |||||| || | || |||||||||||||| || || Sbjct 430745 CTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAA 430804 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| |||| | |||||||||| ||| || ||||| | Sbjct 430805 GATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTCACGTT 430864 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || |||||| || || | || || || || || || | || || || Sbjct 430865 ATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGAC 430924 Query 35725 AAATATCTGCATTC 35738 || |||||||||| Sbjct 430925 GAAAATCTGCATTC 430938 >seq1 Length=6618042 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||| || ||||||||||| | Sbjct 1741421 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 1741362 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| |||||||||||||| || || |||| ||||||||||||| || Sbjct 1741361 AGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 1741302 Query 35630 ACGCTCTCCTTGTC 35643 | | ||||||||| Sbjct 1741301 ATACCCTCCTTGTC 1741288 >seq3 Length=4355815 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| ||| || || || | || || ||||||||||| || || | Sbjct 2043491 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 2043550 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 | | ||||||||||||| || | | |||||||||| ||||| ||| | |||| Sbjct 2043551 TAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTG 2043609 Query 35667 -CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||||||||| || || || | || || || |||||||||| || || || Sbjct 2043610 TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 2043669 Query 35726 AA 35727 || Sbjct 2043670 AA 2043671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793414047640