Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 170 3e-37 seq2 111 2e-19 >seq1 Length=6618042 Score = 170 bits (188), Expect = 3e-37 Identities = 418/629 (66%), Gaps = 5/629 (1%) Strand=Plus/Plus Query 69501 TTGTG-TATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCAT 69559 ||||| || | |||| ||||| || || || | |||||| | | |||||| || | Sbjct 2615596 TTGTGGTAAAGAGCC--TCGAACTCCTCGCCGTACACATCAGCGAGGCCAGGAGCCTCGT 2615653 Query 69560 TTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAA 69619 | || || | || || ||| || | | ||| || || ||||| || || || ||| Sbjct 2615654 TGGGGCAGAACAGTGTCCAGTCACCGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGAG 2615713 Query 69620 TCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAA 69679 |||| ||||| |||||||| | | |||| |||||| || || || || || Sbjct 2615714 TCCAGAGAGCGTAGAAGAGATCACGAGCTCTAACTTCTTCCTTGCCGTGGTTCTTGCGAA 2615773 Query 69680 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCG 69739 |||| | || || | |||||||| ||||| || || || || || || | | || | Sbjct 2615774 GATCCAAGAAGTCGAAGATATCAGAGTGCCAAGGCTCCAGGTAGATAGCGAAAGCACCAG 2615833 Query 69740 GTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCG 69799 | || || ||||||||||| || | ||||||||||||||| || |||| | ||||| | Sbjct 2615834 GGCGCTTGTTTCCTCCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATGG 2615893 Query 69800 GAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATAT 69859 | | ||| || || || ||||| || ||||| || || || | ||||| ||| Sbjct 2615894 GGACAATTCCGTTGGAAGATCCATTGGTACCAGAGATGTAGGAGCCGGTGGCGCGGATAC 2615953 Query 69860 TACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATG 69919 || ||||| || || || || | || ||||| || |||||| || | | Sbjct 2615954 GGTGGATGTTGAGACCAATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAG 2616013 Query 69920 TGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTT 69979 |||| || |||||||| ||||| || || |||||| | || || ||| | | | Sbjct 2616014 TGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCT 2616073 Query 69980 GATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAG 70039 | | || ||| || || || || | || ||||| || |||||||| | || | | Sbjct 2616074 GCGGCTGAGGAGTACCGGCGTTGAACAGGGTTGGAGAAGCATGAGTGAAGTACTTCTGGG 2616133 Query 70040 AAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCG 70098 | | ||| ||||| || ||||| | || || || ||| | || ||||| | || Sbjct 2616134 ACATCAGGTTGTACGTCTCAATGACCTTCTCAATGTCATCACCG-TGGATTCCAACAGCA 2616192 Query 70099 ACACGCATCAACATATGCTGAGGTCGTTC 70127 |||||||| | ||| ||||| || ||||| Sbjct 2616193 ACACGCATAATCATGTGCTGGGGACGTTC 2616221 >seq2 Length=4789688 Score = 111 bits (122), Expect = 2e-19 Identities = 294/448 (66%), Gaps = 16/448 (4%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| ||||| || || |||||||| || || || ||||| || || || || Sbjct 2859436 TTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGGACAGCGAGATGTTG 2859495 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| || || ||||| || || || || | || || || | | | Sbjct 2859496 TCCATGAAGTCGAAGGGATTGGTGGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACGAGA 2859555 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | || || || || || || ||||| ||| | | ||||| || | || Sbjct 2859556 AGTCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCAAGCAGG 2859615 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || || || ||||| ||||| || ||||| | ||||| | ||||| || || || Sbjct 2859616 TTGACGGGCAGAGCATCCGTCAGGAACTCCTGCTCGATCGCGACGGCGTCGGTGAT---- 2859671 Query 39566 GATGTT----ACTACCTCATCACT----CGGTGGATGCAATAAATGTTTAAACATTAAGC 39617 |||||| || | ||| | || |||||| || | || |||| | | Sbjct 2859672 GATGTTCTGGACAATCTCCTTGCTAGGGCGGTGGTTG----AGGTGGGAGAACAGCAGAC 2859727 Query 39618 AGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTC 39677 | || ||||| || || |||||||| | | || | ||||| || || ||||| | Sbjct 2859728 AAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGAC 2859787 Query 39678 CAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGA 39737 ||||||| ||||||||||| || ||||| || || | |||||| || || || ||||||| Sbjct 2859788 CAGGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCGGAGAAGAAGA 2859847 Query 39738 TGCCTTCTACTGCTGCAAATGCAACAAG 39765 |||| || || || || || ||||| || Sbjct 2859848 TGCCCTCCACAGCGGCGAAGGCAACGAG 2859875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908516650120