Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 4e-13 seq3 82.4 6e-11 >seq7 Length=1958609 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || |||||||||||||| || | |||| | || || ||||| ||||| Sbjct 430740 GTAGACTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGCTTACCA 430799 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || ||||| || | |||||| || || ||| || ||| Sbjct 430800 GCGAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATTTTCGACTTC 430859 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || |||| | ||| ||||| || || || | || || || || || Sbjct 430860 ACGTTATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGTCTTTCCGGTGAGGGTC 430919 Query 27231 TTCACAAAGATTTGCAT 27247 || || || || ||||| Sbjct 430920 TTGACGAAAATCTGCAT 430936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || |||||||||||| | |||| |||| || ||||| || || ||| | Sbjct 430518 TCCTTCTGGATATTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAG 430577 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || | ||||| || || || || | |||||| || || ||||||| | |||| | | Sbjct 430578 ATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTG 430637 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| | | || || || || || || | || || |||||||| ||||| Sbjct 430638 TCGATTGTGTCAGAGCTCTCGACCTCCAGCGTAATGGTCTTTCCGGTCAGAGTCTTCACG 430697 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 430698 AAGATCTGCAT 430708 >seq3 Length=4355815 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 || || || ||||||||||||| |||| | || |||||||| ||||| ||| | || Sbjct 2043493 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATA 2043552 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| || ||||| || | |||||| || || |||||| || | | | || Sbjct 2043553 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCG 2043612 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | ||||| | | || || || || || || | || |||||||| || || || ||| Sbjct 2043613 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAG 2043672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934229096696