Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 seq2 109 7e-19 >seq1 Length=6618042 Score = 154 bits (170), Expect = 2e-32 Identities = 411/624 (66%), Gaps = 12/624 (2%) Strand=Plus/Plus Query 111468 TTGTG-TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526 ||||| || || || || |||||||| || | | || | ||| || || |||| || Sbjct 2615596 TTGTGGTAAAGAGCCTCGAACTCCTCGCCGTACACATCAGCGAGGCCAGGAGCCTCGTTG 2615655 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || ||||| || | ||| | ||| |||| || ||||||||||| ||||| ||| || Sbjct 2615656 GGGCAGAACAGTGTCCAGTCACCGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGAGTC 2615715 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 || || | | |||||||| | | | | | ||||| | || ||||| || | Sbjct 2615716 CAGAGAGCGTAGAAGAGATCACGAGCTCTAACTTCTTCCTTGCCGTGGTTCTTGCGAAGA 2615775 Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 111706 || | ||| || | |||||| | |||||| ||||| || |||| |||| || || Sbjct 2615776 TCCAAGAAGTCGAAGATATCAGAGTGCCAAGGCTCCAGGTAGATAGCGAAAGCACC---A 2615832 Query 111707 CGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 | ||| || | || | || || | || ||| ||| || || || ||||| Sbjct 2615833 GGGCGCTTGTTTCCTCCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATG 2615892 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 111820 || | ||| || | || ||||| || || || || |||| | | | Sbjct 2615893 GGGACAATTCCGTTGGAAGATCCATTGGTACCAGAGATGTAGGAGCCGGTGGCGCGGATA 2615952 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 ||||||| | |||||||| ||||| ||||||||| ||||||| | | ||| Sbjct 2615953 CGGTGGATGTTGAGACCAATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGA 2616012 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || | || ||||| | || ||| ||||| || ||| |||||||| || | | Sbjct 2616013 GTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGC 2616072 Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 ||||| || ||||| || ||||| |||||||| | || ||| |||| ||| | || Sbjct 2616073 TGCGGCTGAGGAGTACCGGCGTTGAACAGGGTTGGAGAAGCATGAGTGAA-GTACTTCTG 2616131 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||||| || ||| ||||| | ||| |||||||| || |||||||| || | || Sbjct 2616132 GGACATCAGGTTGTACGTCTCAATGACCTTCTCAATGTCATCACCGTGGATTCCAACAGC 2616191 Query 112060 GACCCGCATGAACATGTACTGTGG 112083 || ||||| | ||||| ||| || Sbjct 2616192 AACACGCATAATCATGTGCTGGGG 2616215 Score = 105 bits (116), Expect = 8e-18 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || ||||| ||||| ||||| ||| || | | ||||| | ||| || || || Sbjct 2615320 GAGGCCAAGTTGCAGACAGCAACCTCGTCAGGGGCGCTATACTCGATAATCTCAGTGCAG 2615379 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | |||||| || || || |||| ||||| ||||| |||||| ||||||| |||||| Sbjct 2615380 AGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCATCC 2615439 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 ||||| |||||| | || || || ||||||||||| | | |||||| || | ||||| Sbjct 2615440 TTGTACAGCATGAATGGGGTTCCGGTCTCCGTCTGCGCCTCGAGAATGGCGTACCAAA 2615497 >seq2 Length=4789688 Score = 109 bits (120), Expect = 7e-19 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| ||||||||||| || || || || || || |||||| ||||| Sbjct 2859730 GCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGACCA 2859789 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| ||||| |||||||||| ||| | || | ||| || || |||||||||||||| Sbjct 2859790 GGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCA-AAGGAGCCGGAGAAGAAGAT 2859848 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAA 122836 ||||||||| || || |||| || || | || |||| | || | ||| | | || Sbjct 2859849 GCCCTCCACAGCGGCGAAGGCAACGAGACGCTGAGCAAAGGTG-GACTCCTTGTCCTGAA 2859907 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTT 122864 ||| || || ||||| | |||||||| Sbjct 2859908 TCCACTTGATGGCCCACTCAGCCTTCTT 2859935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031740936800