Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 179 5e-40 seq2 161 1e-34 >seq1 Length=6618042 Score = 179 bits (198), Expect = 5e-40 Identities = 420/626 (67%), Gaps = 16/626 (3%) Strand=Plus/Plus Query 118942 TTGTG-TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 119000 ||||| || || || || ||||| || || | || | ||| || || |||| | Sbjct 2615596 TTGTGGTAAAGAGCCTCGAACTCCTCGCCGTACACATCAGCGAGGCCAGGAGCCTCGTTG 2615655 Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 |||||||| || | ||| | ||| | |||| || ||||||||||||||||| || || Sbjct 2615656 GGGCAGAACAGTGTCCAGTCACCGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGAGTC 2615715 Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 ||||| || |||||||||| ||| | | ||||||| | || || || || | Sbjct 2615716 CAGAGAGCGTAGAAGAGATCACGAGCTCTAACTTCTTCCTTGCCGTGGTTCTTGCGAAGA 2615775 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180 ||||| ||||| | |||||| | |||||| || |||||||| | |||| | || | Sbjct 2615776 TCCAAGAAGTCGAAGATATCAGAGTGCCAAGGCTCCAGGTAGATAGCGAAAGCACC---A 2615832 Query 119181 CGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 | || || |||||| || || || |||||| ||| || || || ||||| Sbjct 2615833 GGGCGCTTGTTTCCTCCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATG 2615892 Query 119235 GGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGA 119292 || | || || | ||| ||||| || || || || ||| | |||| | || Sbjct 2615893 GGGACAATTCCGTTGGAAGATCCATTGGTACCAGAGATGTAGGAGCC--GGTGGCGCGGA 2615950 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 | |||||||| | ||||||||| || || ||||||||| |||| || | ||| Sbjct 2615951 TACGGTGGATGTTGAGACCAATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGA 2616010 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 || || |||| || || || || ||| |||| | ||| |||||||||| | | Sbjct 2616011 GAGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGA 2616070 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT- 119471 || ||| || ||||| |||||||| || ||||| | || || |||| ||| | Sbjct 2616071 GCTGCGGCTGAGGAGTACCGGCGTTGAACAGGGTTGGAGAAGCATGAGTGAA-GTACTTC 2616129 Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531 ||||||||| || ||| ||||| | ||| |||||| || ||||| || || | Sbjct 2616130 TGGGACATCAGGTTGTACGTCTCAATGACCTTCTCAATGTCATCACCGTGGATTCCAACA 2616189 Query 119532 GAGACCCGCATAAACATGTATTGGGG 119557 | || ||||||| ||||| ||||| Sbjct 2616190 GCAACACGCATAATCATGTGCTGGGG 2616215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 276/413 (67%), Gaps = 19/413 (5%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| ||||| || || | || || | |||||| | ||| | |||||| | || Sbjct 699631 ATCAAACCGACCGGGTCGCATCAGAGCCTTGTCAAGAACATCTGGTCTGTTCGTTCCAGC 699572 Query 14125 GATGACAACGA--TGCCC-GTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || ||| |||| ||| | | | ||| ||||| ||||||||||| | || || || Sbjct 699571 GAGGACCACGACTTGCTCAGACGTGTTG---AAGCCGTCCATCTCAGTGAGGATCTGGTT 699515 Query 14182 GATGGTTTGTTCGCGTTCATCATT--CGCAGGCATACCACCC----GCACTGCGTTGCTT 14235 | || || || || || || ||| | || | | | || || || | || Sbjct 699514 CAGTGTACTCTCCCGCTCGTCGTTACCGCCGCCAAAACTCTGTTTAGCTCT-CGAT--TT 699458 Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG-TTGATTTTCACGGGCAACTT 14294 ||||| |||||| |||||||||||||| | ||||| || || | ||| ||||| Sbjct 699457 ACCGATGGCGTCGATTTCATCGATGAATATAATACAGGGAGTGTTCTTC-CGGGCGTTGG 699399 Query 14295 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 14354 | || | ||| || || | | | ||||||||| || |||||||| || || | || | Sbjct 699398 CGAACAGATCACGGACACGCGATGGACCGACACCGACGAACATCTCAACGAATTCGGAGC 699339 Query 14355 CG-GAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 || ||| | || |||||| || |||||||| || | || ||||| || ||| Sbjct 699338 CGCTGACACT-GAAGAAGGGAACTCCGGATTCACCAGCCGTTGCCTTTGCGAGCAGAGTC 699280 Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || || || ||||| ||||| ||||| || || ||| ||||||| Sbjct 699279 TTACCGGTACCCGGAGGCCCTGAGAGAATAGCACCGCGGGGAATCTTGGCACC 699227 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 ||||| ||||| || ||||| | ||| || || || || |||| |||||| || || Sbjct 2615359 TACTCGATAATCTCAGTGCAGAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTG 2615418 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 ||| |||| || ||||||||||| |||||| |||| || || |||||||| || | | Sbjct 2615419 CTCTTCCTGTTGCAAGCATCCTTGTACAGCATGAATGGGGTTCCGGTCTCCGTCTGCGCC 2615478 Query 118875 TTGAGAATAGCCTTCCA 118891 | |||||| || | ||| Sbjct 2615479 TCGAGAATGGCGTACCA 2615495 >seq2 Length=4789688 Score = 161 bits (178), Expect = 1e-34 Identities = 163/209 (78%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| |||||||| ||||| ||||| || || || |||||| ||||| Sbjct 2859730 GCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTGAGACCA 2859789 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| |||||||||| |||||| |||| | ||| ||||| ||||||||||| Sbjct 2859790 GGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCGGAGAAGAAGATG 2859849 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGT-ATCA 130192 ||||||||| ||||| |||| |||||||| |||||||| ||||| |||| | | Sbjct 2859850 CCCTCCACAGCGGCGAAGGCAACGAGACGCTGAGCAAAGG---TGGACTCCTTGTCCTGA 2859906 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTT 130221 | |||||| || ||||||| ||||| || Sbjct 2859907 ATCCACTTGATGGCCCACTCAGCCTTCTT 2859935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434944895480