Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 seq2 147 3e-30 seq4 87.8 2e-12 >seq1 Length=6618042 Score = 154 bits (170), Expect = 2e-32 Identities = 411/624 (66%), Gaps = 12/624 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || || | || || || || || |||||||| ||| Sbjct 2616215 CCCCAGCACATGATTATGCGTGTTGCTGTTGGAATCCACGGTGATGACATTGAGAAGGTC 2616156 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||||||| | ||| |||| ||| || | |||||||| || Sbjct 2616155 ATTGAGACGTACAACCTGATGTCCCAGAAGTAC-TTCACTCATGCTTCTCCAACCCTGTT 2616097 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || ||||| || || || | || |||||||| ||| || ||||| || Sbjct 2616096 CAACGCCGGTACTCCTCAGCCGCAGCTCGCCTCCTGCTTCCTCGTCGACATGAAGGAAGA 2616037 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | ||||| || | ||||| | | ||||||| ||||||||| ||||| Sbjct 2616036 CAGCATTGAGGGTATTTACGACACTCTCAAGACTTGTGCGCTGATCTCAAAGACCGCTGG 2615977 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 |||||||| | ||||||| | | | |||| || || || || || Sbjct 2615976 TGGTATTGGTCTCAACATCCACCGTATCCGCGCCACCGGCTCCTACATCTCTGGTACCAA 2615917 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| || | || ||| | || ||||| || || || ||| ||| || | || || Sbjct 2615916 TGGATCTTCCAACGGAATTGTCCCCATGCTCCGGGTCTTCAACAACACTGCCAGATACGT 2615857 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 | || | || ||| | || || |||| |||| || ||||| ||||| Sbjct 2615856 CGACCAGGGAGGAAACAAGCGCCCT---GGTGCTTTCGCTATCTACCTGGAGCCTTGGCA 2615800 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 | | |||||| | || ||| | || | || ||||| || | || || | | Sbjct 2615799 CTCTGATATCTTCGACTTCTTGGATCTTCGCAAGAACCACGGCAAGGAAGAAGTTAGAGC 2615740 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 || |||||||||| ||||||||||| ||| || |||||||||||| | || |||| || Sbjct 2615739 TCGTGATCTCTTCTACGCTCTCTGGACTCCGGACCTCTTCATGAAGCGTGTCGAGGCGAA 2615680 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 || | ||| | || || || || || |||| ||||| ||| | |||| || || Sbjct 2615679 CGGTGACTGGACACTGTTCTGCCCCAACGAGGCTCCTGGCCTCGCTGATGTGTACGGCGA 2615620 Query 104815 GGAGTTTGAAGCCCTTTA-CACAA 104837 |||||| || || ||||| ||||| Sbjct 2615619 GGAGTTCGAGGCTCTTTACCACAA 2615596 >seq2 Length=4789688 Score = 147 bits (162), Expect = 3e-30 Identities = 172/227 (76%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 94733 CAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGT 94789 ||||||| || || | ||||| || || ||||| || |||||| || | |||| ||| Sbjct 2859952 CAGTTCCTTGCATCCGCAAGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGT 2859893 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | |||||||| |||| ||| | || || || ||| ||||| ||||||||||| | Sbjct 2859892 CCA---CCTTTGCTCAGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCG 2859836 Query 94850 GTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 | ||||| ||| | || | ||||| |||||||| ||||| ||||| |||||| |||| Sbjct 2859835 GCTCCTT-TGCTTCGATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTC 2859777 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| ||||||||||| ||||| || ||| || ||||| Sbjct 2859776 TCCAACGAGCTGATCTCTCGTGATGAGGGTCTGCACACCGACTTTGC 2859730 >seq4 Length=3953819 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 169172 CCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGA 169231 |||||||||||| || |||| ||| ||| ||||||||||| ||| |||| ||||| Sbjct 3098124 CCCTTGATGTGGCTTCCATCGTGATCCTGATCGGTCATGATCATAAGATGACCGTACCGC 3098183 Query 169232 AGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCG 169291 || | ||| ||| ||||| || |||||||| | || ||||||| || Sbjct 3098184 AGACCTTTGGTATCGGTATATTCCTTCTTATGCTGAAGACCAAGGAAGTTCTTGATATTC 3098243 Query 169292 TTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTC 169351 | || |||||||| | || || || ||||||||| ||||| || ||| Sbjct 3098244 TGGATTTCTTGGTTCTTGGAGATTTGATCGATAGAGGCATCACGAACGTTGAGCAGCTTT 3098303 Query 169352 CCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCG 169411 || || | ||| ||||||||| | ||||| | || || || | || || | ||| Sbjct 3098304 CCTCGTAAAGGAAAGACACCGAACAGATCAGGTCCGACCACTGCTCTCCCTGCCATTGCC 3098363 Query 169412 AGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 | | || || || ||||| || |||| |||||| || || Sbjct 3098364 AAACCTTTGGCTGAATCACCTTCTGTGAGGATGAGGGTGCA 3098404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260559404920