Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 206 8e-48 seq7 161 3e-34 seq5 98.7 3e-15 >seq3 Length=4355815 Score = 206 bits (228), Expect = 8e-48 Identities = 921/1451 (63%), Gaps = 17/1451 (1%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| || || |||||| | ||||| || || ||||| || | ||| | | |||| | Sbjct 1578680 CCGCGATCGGTATCGATCTGGGTACCACGTACTCTTGCGTGGGTGTCTTCAGAGATGACC 1578621 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 || | ||||| ||||| || || || |||||| | || || || || | |||||| || | Sbjct 1578620 GTATCGAAATCATTGCCAACGACCAGGGTAACCGGACGACCCCGTCGTTCGTTGCCTTCA 1578561 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| || |||||| |||| |||||| |||| || || || | ||| || || | | Sbjct 1578560 CCGACACCGAGCGTCTGATCGGTGATGCTGCTAAGAACCAGGTTGCCATGAACCCCAGCA 1578501 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACA---C 349433 | || || || || |||||||| || || || | | || | ||| ||| | Sbjct 1578500 ACACTGTGTTCGACGCTAAGCGTCTCATCGGACGCAAGTTCACCGAC---TCTGAGGTCC 1578444 Query 349434 AATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTA 349493 | | || | || || || || || | || || | | |||| || || || || | Sbjct 1578443 AGGCCGACATGAAGCACTTCCCATTCAAGGTCGT-CGAGAAGAA--TGGCAAGCCCATCA 1578387 Query 349494 TTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGG 349553 | ||||| | | || || || || || || ||||| ||||| || || |||| Sbjct 1578386 TCGAGGTCCAGTTCAAGGGCGAGACCAAGCAGTTCACCCCCGAGGAAATCTCCTCCATGG 1578327 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 | | || ||| || | || || | || | |||| || || | | |||| Sbjct 1578326 TCCTGACCAAGATGCGTGAGACCGCCGAGTCTTACCTTGGTGGCACCGTCAACAACGCTG 1578267 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 | || ||||| || || || || || || |||||||| || || || || || || Sbjct 1578266 TCATCACTGTCCCCGCTTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGACGCCGGTC 1578207 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 |||||| || | || ||||| | || || || || |||||||| || || || || | Sbjct 1578206 TCATTGCCGGTCTGAACGTTCTGCGTATCATCAACGAGCCCACTGCAGCCGCTATCGCCT 1578147 Query 349734 ATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 | || ||||| || | | ||| || || | || || || || | ||||||| Sbjct 1578146 ACGGTCTTGACAAGAAGGCTGAGGGTGAGCGCAACGTCCTGATCTTCGACCTGGGTGGTG 1578087 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 |||| || ||||| || || || || |||| ||||| || || || || || | |||| Sbjct 1578086 GTACCTTCGATGTCTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTG 1578027 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 ||||||| || || || ||||| || || || || || || ||||| || || || | Sbjct 1578026 CTGGTGACACCCACCTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCGTCA 1577967 Query 349914 AAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGC 349972 | || || ||||| ||||| || | || | || || | || | || || Sbjct 1577966 ACGAGTTCAAGCG-CAAGCACAAGAAGGACCTGACCACCAACGCTCGTGCTCTCCGCCGT 1577908 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | ||||| ||||| ||||| ||||| || | || || || | || ||||| || Sbjct 1577907 CTCCGCACTGCTTGTGAGCGTGCCAAGCGCACCCTCTCTTCCTCTGCTCAGACCTCCATC 1577848 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || || || || |||| || |||| | || || || |||||||| || Sbjct 1577847 GAGATCGACTCCCTCTTCGAGGGCATTGACTTCTACACCTCCATCACCCGTGCTCGTTTC 1577788 Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152 || || | || ||| || || | | || ||||| || || || || | Sbjct 1577787 GAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCATGGAGCCCGTCGAGCGTGTCCTCCGT 1577728 Query 350153 GATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGT 350212 || || || || ||| | | | || | || | || |||||||| || ||| Sbjct 1577727 GACGCCAAGATTGACAAGGCTTCCGTCCACGAGATCGTCCTTGTCGGTGGTTCCACCCGT 1577668 Query 350213 ATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCA 350272 || || || | || | | | ||| || || || ||| || || | || Sbjct 1577667 ATCCCCAAGATCCAGCGCCTCGTTGGTGACTTCTTCAA---CAAGGAGCCCAACAAGTCC 1577611 Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGA 350332 || || || ||||| |||||||| || |||||||| || ||||| | || | ||||| Sbjct 1577610 ATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCCATCCTGTCTGGT 1577551 Query 350333 AATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTT 350389 | | ||| || | | || | | || || ||||| | || || || | Sbjct 1577550 GACACCTCTTCCAAGTCCACCAACGAGATCCTGCTGCTCGATGTCGCCCCTCTCTCTGTC 1577491 Query 350390 GGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCT 350449 || | || || |||||| || |||||| |||||| | || | || | || Sbjct 1577490 GGTATCGAGACCGCTGGTGGTGTCATGACTCCTCTTATCAAGCGTAACACCACCATCCCC 1577431 Query 350450 ACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAA 350509 || || ||||| | || || ||||| | | || || ||||| | || || || Sbjct 1577430 ACCAAGAAGTCTGAGACCTTCTCTACCTACTCCGACAACCAGCCCGGTGTGCTCATCCAG 1577371 Query 350510 GTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTA 350569 || | || ||||| |||||||| || || || || || || || |||| || Sbjct 1577370 GTCTACGAGGGTGAGCGTGCTCGTACCAAGGACAACAACCTCCTCGGCAAATTCGAGCTT 1577311 Query 350570 AGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGAT 350629 | || ||||| || ||| | || ||||||||||| || ||| | |||||| ||||| Sbjct 1577310 ACTGGCATTCCTCCTGCTCCTCGTGGTGTTCCTCAGATCGAGGTCACCTTCGATGTTGAT 1577251 Query 350630 TCAAATGGTAT 350640 | || ||||| Sbjct 1577250 GCCAACGGTAT 1577240 >seq7 Length=1958609 Score = 161 bits (178), Expect = 3e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || ||||| || || |||||||| || |||||||| || || Sbjct 430706 CATTCCTCCACGCAGGCGGAGGACAAGGTGCAGTGTAGACTCCTTCTGAATATTGTAGTC 430765 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || ||||| || || || || ||||| ||||| ||||| ||||| || || Sbjct 430766 TGACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCCGG 430825 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| ||||| | || || ||||| || | ||| || | ||| Sbjct 430826 GGGAATACCCTCCTTGTCCTGGATTTTCGACTTCACGTTATCGATGGTATCTGACGATTC 430885 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || |||| ||||||||||| || || || || |||||||||||| Sbjct 430886 GACTTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCATT 430937 Score = 113 bits (124), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 |||||||||| | ||| ||||| || || ||||| ||| || || ||||| || || | Sbjct 430480 TACCACCACGGAGTCTGAGAACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGG 430539 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | | || || || || ||||| || || || || ||||| | || ||||| || || | Sbjct 430540 AGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGTG 430599 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTTCA 140687 | || || || || ||||| || || ||| || || || || || | ||||| || Sbjct 430600 GGATACCCTCCTTGTCCTGGATCTT-GCTCTTCACGTTGTCGATTGTGTCAGAGCTCTCG 430658 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || |||| ||||||||||| || || || || || ||||||||| Sbjct 430659 ACCTCCAGCGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 430709 >seq5 Length=3167764 Score = 98.7 bits (108), Expect = 3e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 378231 AATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCAT 378290 |||||||||||| | || || |||||||| ||||| | ||| |||||||| |||| Sbjct 1278574 AATATAACCAGTCTCTGCGGTCTTCACTGCAGTGTCAATGAGACCCTCACGACCAGCCAT 1278515 Query 378291 TGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCC 378350 || |||||||| ||||| ||||| || || |||| | | | || | |||| ||| || Sbjct 1278514 AGCGTGGAAGAAGAATTCGGTAGGCGTCAGACCACGGAGATACGAGTTTTCAACAAAGCC 1278455 Query 378351 TCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCC 378410 | | |||| || | |||| ||||| ||||||| || || || | || || || Sbjct 1278454 ACGAGACTCTGGAGAGTAGTCATCCTTTGTGAAATGAGGCAAGGTGCGGTACTTGAAGCC 1278395 Query 378411 ATATGGAATTCGTTTTCCATCAAC 378434 | ||||| || || || ||||| Sbjct 1278394 GAAAGGAATACGCTTGCCCTCAAC 1278371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253759331499