Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 244 1e-59 seq2 123 3e-23 >seq1 Length=6618042 Score = 244 bits (270), Expect = 1e-59 Identities = 407/588 (69%), Gaps = 0/588 (0%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| || || || || ||||| || || ||| | | ||| ||||| ||| || Sbjct 2616200 ATGCGTGTTGCTGTTGGAATCCACGGTGATGACATTGAGAAGGTCATTGAGACGTACAAC 2616141 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 |||||| |||||||| |||||| || || | || ||||| |||||||||||||| Sbjct 2616140 CTGATGTCCCAGAAGTACTTCACTCATGCTTCTCCAACCCTGTTCAACGCCGGTACTCCT 2616081 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 | |||||| | | ||| ||||| || | |||||||| |||||||||||||| || Sbjct 2616080 CAGCCGCAGCTCGCCTCCTGCTTCCTCGTCGACATGAAGGAAGACAGCATTGAGGGTATT 2616021 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 ||||| || |||||| || |||| ||||| ||| | || ||||| || || || Sbjct 2616020 TACGACACTCTCAAGACTTGTGCGCTGATCTCAAAGACCGCTGGTGGTATTGGTCTCAAC 2615961 Query 19358 TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGT 19417 | |||||| | | || | ||| ||| || || ||| || |||| Sbjct 2615960 ATCCACCGTATCCGCGCCACCGGCTCCTACATCTCTGGTACCAATGGATCTTCCAACGGA 2615901 Query 19418 ATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGC 19477 || ||||| |||||||| |||||||||||||| ||||| |||||| ||||||| || | Sbjct 2615900 ATTGTCCCCATGCTCCGGGTCTTCAACAACACTGCCAGATACGTCGACCAGGGAGGAAAC 2615841 Query 19478 AAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTC 19537 || ||| || | ||||| |||||||| ||||| |||||| | || || | || ||| Sbjct 2615840 AAGCGCCCTGGTGCTTTCGCTATCTACCTGGAGCCTTGGCACTCTGATATCTTCGACTTC 2615781 Query 19538 CTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCC 19597 | || || ||| |||||| || | || || | | ||| || |||||| || Sbjct 2615780 TTGGATCTTCGCAAGAACCACGGCAAGGAAGAAGTTAGAGCTCGTGATCTCTTCTACGCT 2615721 Query 19598 TTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATG 19657 | |||| ||||||||| |||||| || || ||| | ||| || ||| ||| | Sbjct 2615720 CTCTGGACTCCGGACCTCTTCATGAAGCGTGTCGAGGCGAACGGTGACTGGACACTGTTC 2615661 Query 19658 TGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTC 19705 ||||| |||| |||||||| | || || |||||||||| |||| Sbjct 2615660 TGCCCCAACGAGGCTCCTGGCCTCGCTGATGTGTACGGCGAGGAGTTC 2615613 Score = 230 bits (254), Expect = 3e-55 Identities = 412/600 (69%), Gaps = 4/600 (1%) Strand=Plus/Plus Query 79304 CCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCT 79363 |||| || || ||||| | ||||| || ||||| ||||| | ||| |||||| Sbjct 2615618 CCTCGCCGTACACATCAGCGAGGCCAGGAGCCTCGTTGGGGCAGAACAGTGTCCAGTCAC 2615677 Query 79364 CGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGC 79423 ||| | ||| || || ||||||||||||||| |||| || || |||||| || | Sbjct 2615678 CGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGAGTCCAGAGAGCGTAGAAGAGATCAC 2615737 Query 79424 GGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGG 79483 | | | || || | ||| |||||| || || || | ||||| | ||| || | Sbjct 2615738 GAGCTCTAACTTCTTCCTTGCCGTGGTTCTTGCGAAGATCCAAGAAGTCGAAGATATCAG 2615797 Query 79484 CGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGA 79543 |||||| |||||||| ||||| ||||| | ||| ||||||| || ||||||| || Sbjct 2615798 AGTGCCAAGGCTCCAGGTAGATAGCGAAAGCACCAGGGCGCTTGTTTCCTCCCTGGTCGA 2615857 Query 79544 CGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGT 79603 |||| | ||| ||||||||||| || ||||||||||| || || |||| || || | Sbjct 2615858 CGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATGGGGACAATTCCGTTGGAAGATCCAT 2615917 Query 79604 TCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT--GTTCGAGCAGTGGATTCCGATGCC 79661 | || || ||| | ||| | || || || | | || || || || || || Sbjct 2615918 TGGTACCAGAGATGTAGGAGCCGGTGGCGCGGATACGGTGGA--TGTTGAGACCAATACC 2615975 Query 79662 CCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGA 79721 || | ||| ||||| |||| || |||||| || ||||| || ||||| || Sbjct 2615976 ACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAGTGTCGTAAATACCCTCAATGCT 2616035 Query 79722 GTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTT 79781 ||| |||||||| |||| ||||||||| | | ||| || | ||||||||||| Sbjct 2616036 GTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCTGCGGCTGAGGAGTACCGGCGTT 2616095 Query 79782 GAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTT 79841 ||| ||||| || | || || |||||| |||| ||| |||||| | ||||||||| | Sbjct 2616096 GAACAGGGTTGGAGAAGCATGAGTGAAGTACTTCTGGGACATCAGGTTGTACGTCTCAAT 2616155 Query 79842 GACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901 ||| | | ||| || |||||||| || || || || ||||| | | || |||||| Sbjct 2616156 GACCTTCTCAATGTCATCACCGTGGATTCCAACAGCAACACGCATAATCATGTGCTGGGG 2616215 Score = 161 bits (178), Expect = 1e-34 Identities = 680/1059 (64%), Gaps = 35/1059 (3%) Strand=Plus/Plus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 ||||||||||| ||||| |||||| ||||||| || | |||||| || | | |||| Sbjct 2614447 TAGTACATGCCAGTCTTCAGACCCATCTTCCACCCAGCGAAGTGCATGCTGGTAATCTTG 2614506 Query 78259 GCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCG 78318 ||| | | || | || |||| |||||||| ||||| |||||||||||| ||||||| Sbjct 2614507 CCCATAGTAGGCTCCTTCATGTGAATGTTGAGAGACTGAGACTGGTCGATGAACGCACCA 2614566 Query 78319 CGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATG 78378 ||||| || ||||| | | || |||| |||||||| | ||| ||| | | Sbjct 2614567 CGGTCAGCAGCCATCTGAAGGATATGGCGCTGCGAGATCTCCCACACTGTCTTGTAGAGG 2614626 Query 78379 GCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTAC--GCTCCCACCGGCTCGCACAAT-- 78434 ||||| | ||| | |||||| | | ||| | | ||| || |||| Sbjct 2614627 GCCTTGATGTCTGCAGGGATGT--TGGGAATGTTCTGAATAGAACCACCTTCGGCAATGA 2614684 Query 78435 TTC-ATTCTTAAT-TTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGACCAGGTGC 78492 | | ||||| || ||| | |||| | | | ||||||| || ||| Sbjct 2614685 TACGGTTCTTCATGTTGTCAG-ACCAGAGGCCAAGGTCGACAAGATCCTTGAGCAGCCAG 2614743 Query 78493 CGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTAC 78552 |||| | | |||||||||||| || || || |||||||| | ||||| Sbjct 2614744 GGGTTGACAACTTGGAACTCGCCGGCAAGAACACGACGGGAATAGATGTTCGAGGTGTAG 2614803 Query 78553 GGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCG 78612 |||||||| || || || | |||||| ||| || || ||||| || || Sbjct 2614804 GGCTCGAAGCATTCATTAAAGCCGAGGATCTGACTGGTGCTCGCAGTGGGCATAGGAGCC 2614863 Query 78613 ACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG------GCCGTCC 78666 || || | || || | ||| ||| | |||||| |||| || | ||| Sbjct 2614864 ACGAGCAAGCTGTTGCGGACACCGTGCTTGGCGATCTCAGCCTTCAGCGAGCTCCAATCC 2614923 Query 78667 CAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGC 78726 || | ||| | | | | |||||||||| || || || |||| ||| | ||| Sbjct 2614924 CAGAGGTCAGTGGGAGTCCTGTCCCACATGTCATACTGGAGAATTCCCTGGGAGACTGGC 2614983 Query 78727 GACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGG 78786 || || | | ||||| || | || | || |||||| | ||| ||| || ||| Sbjct 2614984 GAGCCTTCATATGTCTCATACGTGCCATGCTGCTTGGCCAACTCGACCGACGCGGTGAGG 2615043 Query 78787 GCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCG 78846 || ||||||| | || ||||||||| |||| |||| | |||| | |||| Sbjct 2615044 GCACCGTGGTAGATAGTCTCGAAGATCTGAATGTTCAGCTGCCTAGCCTCAGGAGAGTCG 2615103 Query 78847 AACG--AAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCG 78904 || | || || | ||| | ||| ||||||| || || | ||| || | ||| |||| Sbjct 2615104 AATGGCAAGCGCAGTGCA--AGGAATGCATCGGCAAGACCATTGACACCAAGAGCAATCG 2615161 Query 78905 GTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC-GGGTAAAAGTTCCGATCGATG 78963 | |||||||| | ||||||||| |||| || | | ||||| |||| ||||||| Sbjct 2615162 GACGGTGGCGGAGGTTGCTCTTCTTGGCC-TCTGGAACAGGGTAGTAGTTGATATCGATG 2615220 Query 78964 ACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAA- 79022 | ||||| ||| || || |||| | || ||||||| || ||| | || ||| | Sbjct 2615221 ATCTTGTTCAAGTTGCGAACGAGGACCTGGGTGACCTCGTGCAGCTTGCCAAAGTCATAC 2615280 Query 79023 -----ATGATTTCCTTTGATGAAAGTCGG-TAGGCACAGCGATGCCAGGTTGCACACGGC 79076 | | | | || ||| || || | ||| || || |||| |||||| || || Sbjct 2615281 TCGCCACGGGCAGCGTCGACGAAGGTAGGCAATGCA-AGAGAGGCCAAGTTGCAGACAGC 2615339 Query 79077 CGTCTCGTCCGG---GCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGAT 79133 |||||| || |||| | |||||| || || ||||| | || || ||| Sbjct 2615340 AACCTCGTCAGGGGCGCTATA---CTCGATAATCTCAGTGCAGAGGTTGGAGCTGCGGAT 2615396 Query 79134 GGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGG 79193 || || | ||||||||||||||||||| ||| || || |||||||| |||| | || Sbjct 2615397 AGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCATCCTTGTACAGCATGAATGG 2615456 Query 79194 CGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCA 79232 || |||||||| ||| || ||||| | ||| ||| Sbjct 2615457 GGTTCCGGTCTCCGTCTGCGCCTCGAGAATGGCGTACCA 2615495 >seq2 Length=4789688 Score = 123 bits (136), Expect = 3e-23 Identities = 337/505 (67%), Gaps = 31/505 (6%) Strand=Plus/Minus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGA--GTCCTGGAG-CATCATTTGCACAACGTCTC 59987 || || || |||||||| ||||||| | | |||| | | ||||| || |||||| Sbjct 2859932 AAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGTCCACCTTTGCTCAGCGTCTC 2859873 Query 59988 ATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 | || || || ||||| || ||||||||||| ||||| || | | || |||||| Sbjct 2859872 GTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTTTGCTTCGATCTTCTGG 2859813 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 || || |||||||| || ||||| || || | ||||||||||||||||| || || || Sbjct 2859812 CTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCTCGTGAT 2859753 Query 60108 GAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCC 60166 ||||| || || || ||||| || | ||| | || |||| | | | |||| Sbjct 2859752 GAGGGTCTGCACACCGACTTTGC-TTGTCTGCTGTTCTCCCACC---TCAACCACCGCCC 2859697 Query 60167 TTCCAAGGATATTCACAAGA--TTGTTCAGTG-GGC--TTGTGAAGTGGAGAGCGAGTTC 60221 | |||||| ||| | ||| | ||| | || | | || | ||| |||||| Sbjct 2859696 TAGCAAGGAGATTGTCCAGAACATCATCACCGACGCCGTCGCGA--TCGAGCAGGAGTTC 2859639 Query 60222 ATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTAC 60281 | || || || || || ||| || | || ||| |||| ||| |||||| Sbjct 2859638 CTGACGGATGCTCTGCCCGTCAACCTGCTTGGCATGAACGCCAAGCTCATGTGCCAGTAC 2859579 Query 60282 ATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGG-----AGAAGGACCAATTT 60333 || |||| ||||| ||||| ||| |||| | |||| ||||| || | Sbjct 2859578 ATCGAGTTCGTCGCTGACCGACTTCTCGTGGCTC---TTGGCAACAAGAAGTAC-----T 2859527 Query 60334 ACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACT 60393 || || | || || ||||||| ||||| | ||||||| || || |||||||||| Sbjct 2859526 ACAACGCCACCAATCCCTTCGACTTCATGGACAACATCTCGCTGTCCGGCAAGACCAACT 2859467 Query 60394 TCTTTGAGAAGCGGGTCGGGGATTA 60418 |||| |||||||| ||||| || || Sbjct 2859466 TCTTCGAGAAGCGTGTCGGTGACTA 2859442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524573733520