Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 233 2e-56
seq4 86.0 7e-12
>seq1
Length=6618042
Score = 233 bits (258), Expect = 2e-56
Identities = 411/592 (69%), Gaps = 10/592 (2%)
Strand=Plus/Minus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| || || | || ||||||||||| ||| | ||| |||||||||| ||
Sbjct 2616200 ATGCGTGTTGCTGTTGGAATCCACGGTGATGACATTGAGAAGGTCATTGAGACGTACAAC 2616141
Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314
| ||| ||| |||||||| || || || | ||||||||||||||||| ||||| |
Sbjct 2616140 CTGATGTCCCAGAAGTACTTCACTCATGCTTCTCCAACCCTGTTCAACGCCGGTACTCCT 2616081
Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374
|| || ||| | | ||||||||| || | |||||||| ||| || || || ||
Sbjct 2616080 CAGCCGCAGCTCGCCTCCTGCTTCCTCGTCGACATGAAGGAAGACAGCATTGAGGGTATT 2616021
Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434
||||| || |||||| ||||| | ||||| ||| | |||||||| ||| || ||
Sbjct 2616020 TACGACACTCTCAAGACTTGTGCGCTGATCTCAAAGACCGCTGGTGGTATTGGTCTCAAC 2615961
Query 53435 TGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492
|| | ||| ||| || | |||| | ||| || || || || || | |
Sbjct 2615960 A--TCCACCGTATCCGCGCCACCGGCTCCTACATCTCTGGTACCAATGGATCTTCCAACG 2615903
Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552
|||| || || |||||||| |||||||||||||| ||| | |||||| ||||||| ||
Sbjct 2615902 GAATTGTCCCCATGCTCCGGGTCTTCAACAACACTGCCAGATACGTCGACCAGGGAGGAA 2615843
Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612
|||||| || | ||||| |||||||| ||||| |||||| | || || | || |
Sbjct 2615842 ACAAGCGCCCTGGTGCTTTCGCTATCTACCTGGAGCCTTGGCACTCTGATATCTTCGACT 2615783
Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCCGTGACCTGTT-TA 53669
| | || || || ||| || || | ||||| | | ||| ||||| || || ||
Sbjct 2615782 TCTTGGATCTTCGCAAGAACCACGGCAAGGAAGAAGTTAGAGCT--CGTGATCTCTTCTA 2615725
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
| ||||| |||| |||||||||||||||| | || ||| | ||| || ||| |
Sbjct 2615724 C-GCTCTCTGGACTCCGGACCTCTTCATGAAGCGTGTCGAGGCGAACGGTGACTGGACAC 2615666
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781
|| | ||||| |||||| || |||||| | ||| ||||| ||||||||
Sbjct 2615665 TGTTCTGCCCCAACGAGGCTCCTGGCCTCGCTGATGTGTACGGCGAGGAGTT 2615614
Score = 111 bits (122), Expect = 2e-19
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||||| | ||| ||| ||||||||||| | ||| | | || | ||| ||
Sbjct 2614633 TCAAGGCCCTCTACAAGACAGTGTGGGAGATCTCGCAGCGCCATATCCTTCAGATGGCTG 2614574
Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847
|||| |||||||||| |||||||||||| |||||||| ||||| |||| || | |||
Sbjct 2614573 CTGACCGTGGTGCGTTCATCGACCAGTCTCAGTCTCTCAACATTCACATGAAGGAGCCTA 2614514
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
| ||| |||| | | | |||||||| |||||||||| ||| || ||||| || |
Sbjct 2614513 CTATGGGCAAGATTACCAGCATGCACTTCGCTGGGTGGAAGATGGGTCTGAAGACTGGCA 2614454
Query 55908 TGTACTATCTGCGGAC 55923
||||||| || || ||
Sbjct 2614453 TGTACTACCTTCGTAC 2614438
>seq4
Length=3953819
Score = 86.0 bits (94), Expect = 7e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 119077 GAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTC 119136
||| |||||| |||||||||||| | ||||| | |||||| || || ||||| |
Sbjct 3099254 GAAAACGTTGCAGAGCTTGGCACCGAAACCGTTTCTACCACCAGTTACTTTCTGCTGGTT 3099313
Query 119137 GTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGATCCAAAT 119193
||| ||||| ||||| ||| | |||||| ||||| || ||||||||||| ||||
Sbjct 3099314 GTCATTGTAATTGGACGAGGTAAGAAGGTGGCCAAAAATCAGCTCGGGGATGTAAAT 3099370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215774273400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |