Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 233 2e-56 seq4 86.0 7e-12 >seq1 Length=6618042 Score = 233 bits (258), Expect = 2e-56 Identities = 411/592 (69%), Gaps = 10/592 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | || ||||||||||| ||| | ||| |||||||||| || Sbjct 2616200 ATGCGTGTTGCTGTTGGAATCCACGGTGATGACATTGAGAAGGTCATTGAGACGTACAAC 2616141 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| ||| |||||||| || || || | ||||||||||||||||| ||||| | Sbjct 2616140 CTGATGTCCCAGAAGTACTTCACTCATGCTTCTCCAACCCTGTTCAACGCCGGTACTCCT 2616081 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || || ||| | | ||||||||| || | |||||||| ||| || || || || Sbjct 2616080 CAGCCGCAGCTCGCCTCCTGCTTCCTCGTCGACATGAAGGAAGACAGCATTGAGGGTATT 2616021 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || |||||| ||||| | ||||| ||| | |||||||| ||| || || Sbjct 2616020 TACGACACTCTCAAGACTTGTGCGCTGATCTCAAAGACCGCTGGTGGTATTGGTCTCAAC 2615961 Query 53435 TGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | ||| ||| || | |||| | ||| || || || || || | | Sbjct 2615960 A--TCCACCGTATCCGCGCCACCGGCTCCTACATCTCTGGTACCAATGGATCTTCCAACG 2615903 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 |||| || || |||||||| |||||||||||||| ||| | |||||| ||||||| || Sbjct 2615902 GAATTGTCCCCATGCTCCGGGTCTTCAACAACACTGCCAGATACGTCGACCAGGGAGGAA 2615843 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 |||||| || | ||||| |||||||| ||||| |||||| | || || | || | Sbjct 2615842 ACAAGCGCCCTGGTGCTTTCGCTATCTACCTGGAGCCTTGGCACTCTGATATCTTCGACT 2615783 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCCGTGACCTGTT-TA 53669 | | || || || ||| || || | ||||| | | ||| ||||| || || || Sbjct 2615782 TCTTGGATCTTCGCAAGAACCACGGCAAGGAAGAAGTTAGAGCT--CGTGATCTCTTCTA 2615725 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 | ||||| |||| |||||||||||||||| | || ||| | ||| || ||| | Sbjct 2615724 C-GCTCTCTGGACTCCGGACCTCTTCATGAAGCGTGTCGAGGCGAACGGTGACTGGACAC 2615666 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 || | ||||| |||||| || |||||| | ||| ||||| |||||||| Sbjct 2615665 TGTTCTGCCCCAACGAGGCTCCTGGCCTCGCTGATGTGTACGGCGAGGAGTT 2615614 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | ||| ||| ||||||||||| | ||| | | || | ||| || Sbjct 2614633 TCAAGGCCCTCTACAAGACAGTGTGGGAGATCTCGCAGCGCCATATCCTTCAGATGGCTG 2614574 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 |||| |||||||||| |||||||||||| |||||||| ||||| |||| || | ||| Sbjct 2614573 CTGACCGTGGTGCGTTCATCGACCAGTCTCAGTCTCTCAACATTCACATGAAGGAGCCTA 2614514 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | | |||||||| |||||||||| ||| || ||||| || | Sbjct 2614513 CTATGGGCAAGATTACCAGCATGCACTTCGCTGGGTGGAAGATGGGTCTGAAGACTGGCA 2614454 Query 55908 TGTACTATCTGCGGAC 55923 ||||||| || || || Sbjct 2614453 TGTACTACCTTCGTAC 2614438 >seq4 Length=3953819 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 119077 GAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTC 119136 ||| |||||| |||||||||||| | ||||| | |||||| || || ||||| | Sbjct 3099254 GAAAACGTTGCAGAGCTTGGCACCGAAACCGTTTCTACCACCAGTTACTTTCTGCTGGTT 3099313 Query 119137 GTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGATCCAAAT 119193 ||| ||||| ||||| ||| | |||||| ||||| || ||||||||||| |||| Sbjct 3099314 GTCATTGTAATTGGACGAGGTAAGAAGGTGGCCAAAAATCAGCTCGGGGATGTAAAT 3099370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215774273400