Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7 168 8e-37 seq1 149 7e-31 seq3 138 1e-27 seq2 138 1e-27 >seq7 Length=1958609 Score = 168 bits (186), Expect = 8e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || |||||||||||||| || || ||||| ||||| | || | ||| | Sbjct 431152 GTCAAGACCCTCACCGGCAAGACTATCACCCTGGAGGTGGAGTCGAGCGACACCATCGAC 431093 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || || |||||||||||||| || || Sbjct 431092 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGCCTGATC 431033 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||||| || ||||| | |||||||| |||| ||||| Sbjct 431032 TTCGCAGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTATAACATCCAGAAGGAG 430973 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||| || || ||| ||||||| || |||||| Sbjct 430972 AGCACTCTCCACCTTGTCCTGCGTCTGCGTGGTGGA 430937 Score = 165 bits (182), Expect = 9e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| || ||||| ||||| ||||| || || || || || Sbjct 430937 AATGCAGATTTTCGTCAAGACCCTCACCGGAAAGACCATTACCCTCGAAGTCGAATCGTC 430878 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || ||||| | ||||| |||||||||||||| ||||| || ||||| Sbjct 430877 AGATACCATCGATAACGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCGGACCA 430818 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || ||||||||||| || ||||||| || ||| | ||||||| || Sbjct 430817 GCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCTTGTCAGACTACAA 430758 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || ||||| || || || || || ||| | || || || || ||| Sbjct 430757 TATTCAGAAGGAGTCTACACTGCACCTTGTCCTCCGCCTGCGTGGAGGA 430709 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 |||||||||||||| || |||||||| ||||| | || | ||| | || | ||| | Sbjct 431425 ACCGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAACGTCAAGTCC 431366 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || |||||||||||||| | || || || || ||| Sbjct 431365 AAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGCTTGATCTTCGCGGGCAAG 431306 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | ||| || || | |||||||| |||| ||||| ||||| ||||| Sbjct 431305 CAGCTTGAGGACGGTCGCACGCTCTCCGACTATAACATCCAGAAGGAGTCCACCCTTCAC 431246 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || || | ||||| || |||||| Sbjct 431245 CTGGTGCTTCGTCTCCGTGGTGGA 431222 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 430709 AATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACGCTGGAGGTCGAGAGCTC 430650 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || ||||| || || |||||||||||||| || || |||||||| Sbjct 430649 TGACACAATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 430590 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | || || || || ||||| || ||||| | ||| || || | ||||| || Sbjct 430589 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAA 430530 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| |||||| || || || | | || || ||||| Sbjct 430529 TATCCAGAAGGAGAGCACTCTCCACCTGGTTCTCAGACTCCGTGGTGG 430482 >seq1 Length=6618042 Score = 149 bits (164), Expect = 7e-31 Identities = 799/1276 (63%), Gaps = 72/1276 (6%) Strand=Plus/Plus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACG 80599 |||||||||| | ||| | || |||| || | || || || | | ||||| |||| Sbjct 2614946 CCCACATGTCATACTGGAGAATTCCCTGGGAGACTGGCGAGCCTTCATATGTCTCATACG 2615005 Query 80600 GGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAA 80659 ||| | | |||||||| ||| |||| | | ||||| |||| || || ||| | Sbjct 2615006 TGCCATGCTGCTTGGCCAACTCGACCGACGCGGTGAGGGCACCGTGGTAGATAGTCTCGA 2615065 Query 80660 AGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 ||| |||||| | |||| || |||||| | ||||| || | || Sbjct 2615066 AGATCTGAATGTTCAGCTGCCTAGCCTCAGGAGAGTCGAATGGCAAGCGCAGTGCAAGGA 2615125 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCG-C 80778 | | || || || || | || || | || ||||| |||||||| ||| | || | Sbjct 2615126 ATGCATCGGCAAGACCATTGACACCAAGAGCAATCGGACGGTGGCGGAGGTT-GCTCTTC 2615184 Query 80779 TCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838 | |||||| |||| ||||| |||| ||||||||| ||||| |||||| | Sbjct 2615185 TTGGCCTCTGGAACAGGGTAGTAGTTGATATCGATGATCTTGTTCAAGTTGCGAACGAGG 2615244 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCC-----CTTC-ACAAAT 80892 ||| | || || || || || || |||||| | | | | | || || || Sbjct 2615245 ACCTGGGTGACCTCGTGCAGCTTGCCAAAGTCATACTCGCCACGGGCAGCGTCGACGAAG 2615304 Query 80893 GCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 | || || || || || |||| ||||| || || ||||| |||| | || |||| Sbjct 2615305 GTAGGCAATGCA-AGAGAGGCCAAGTTGCAGACAGCAACCTCGTCAGGGGCGCTATACTC 2615363 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 || || || ||||| | || || || ||||||||||| |||||||| ||| Sbjct 2615364 GATAATCTCAGTGCAGAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTT 2615423 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 ||||||||| |||||||| |||| | ||||| |||||||| ||| | || ||| Sbjct 2615424 CCTGTTGCAAGCATCCTTGTACAGCATGAATGGGGTTCCGGTCTCCGTCTGCGCCTCGAG 2615483 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 ||||||| ||||| | | ||||| || | ||||| | ||||||| | |||| Sbjct 2615484 AATGGCGTACCAAAGTTTCTGAGCCTTAACAGTCCTGCGGCCTCTGCCTTCTTGCTCATA 2615543 Query 81132 ----------------CTTGG------------CG--------TAAGCTT---------- 81145 ||||| || | |||| Sbjct 2615544 CCTAATTACAGGTTAGCTTGGTTTTTGAAAGTTCGGAGGTGAAAATGCTTACTTGTGGTA 2615603 Query 81146 -----CGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACAT 81200 | ||||||| | |||| | |||| |||| | || |||||| ||||| | Sbjct 2615604 AAGAGCCTCGAACTCCTCGCCGTACACATCAGCGAGGCCAGGAGCCTCGTTGGGGCAGAA 2615663 Query 81201 CAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGC 81260 ||| |||||| || ||| ||| ||||||||| ||| || ||||||| || Sbjct 2615664 CAGTGTCCAGTCACCGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGAGTCCAGAGAGC 2615723 Query 81261 GGTGAACAGGTCGCGGCAGCGC--GCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGA 81318 | ||| || || || ||| | | || || | || ||||| ||| | || | Sbjct 2615724 GTAGAAGAGATCACG--AGCTCTAACTTCTTCCTTGCCGTGGTTCTTGCGAAGATCCAAG 2615781 Query 81319 AAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG 81378 ||||| | ||| || | ||||| |||||||| || | |||| | || ||| | Sbjct 2615782 AAGTCGAAGATATCAGAGTGCCAAGGCTCCAGGTAGATAGCGAAAGCACCAGGGCGCTTG 2615841 Query 81379 ---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATA 81435 || ||||||| |||||| | |||||| ||| || || || | ||| |||| || Sbjct 2615842 TTTCCTCCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATGGGGACAATT 2615901 Query 81436 CCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATT 81495 || | || || || ||||| ||| || || ||||||| | | ||| Sbjct 2615902 CCGTTGGAAGATCCATTGGTACCAGAGATGTAGGAGCCGGTGGCGCGGATACGGTGGATG 2615961 Query 81496 GAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAA 81555 ||||| || ||||| | |||||| ||| | ||||| || | || || ||| Sbjct 2615962 TTGAGACCAATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAGTGTCGTAA 2616021 Query 81556 ATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTT 81615 || ||||| ||||| |||| |||||||| | | ||| ||| | | ||| || | Sbjct 2616022 ATACCCTCAATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCTGCGG--CT 2616079 Query 81616 TTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCA 81673 ||| ||||| |||||||| ||||| | || ||| |||| || | ||||||| Sbjct 2616080 GAGGAGTACCGGCGTTGAACAGGGTTGGAGAAGCATGAGTGAAGTACTTCTGGGACATCA 2616139 Query 81674 GGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCA 81733 ||| || || || |||| ||| || |||||||| || || | ||| ||||||| Sbjct 2616140 GGTTGTACGTCTCAATGACCTTCTCAATGTCATCACCGTGGATTCCAACAGCAACACGCA 2616199 Query 81734 TAAACATGTACTGGGG 81749 ||| ||||| |||||| Sbjct 2616200 TAATCATGTGCTGGGG 2616215 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || |||||||||||||| || || ||||||||||| || ||| Sbjct 1741288 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAG 1741347 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || ||||| | || || || |||| ||||| || || || || || || || Sbjct 1741348 GACGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTG 1741407 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 1741408 CGCCTGCGTGGTGG 1741421 >seq3 Length=4355815 Score = 138 bits (152), Expect = 1e-27 Identities = 142/183 (78%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || || ||||| ||||| || || || ||||| | || | ||| Sbjct 2043672 CTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGCGACACCAT 2043613 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | || | ||||| || ||||||||||||||||| || || || |||||||||||||| Sbjct 2043612 CGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCT 2043553 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAA 27592 || || ||||||||||| |||||||||| || || || ||| ||||| || |||| | Sbjct 2043552 TATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGC-GACTACAACATCCAGA 2043494 Query 27593 AGG 27595 ||| Sbjct 2043493 AGG 2043491 >seq2 Length=4789688 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGG-GTCGTCGTTTGGTCAGCGT 64719 || |||||||| ||||||||| |||||| | | || ||| | |||| ||||||| Sbjct 2859935 AAGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGTCCACCTTTGCTCAGCGT 2859876 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || || ||| |||||| || || ||||| || || || || ||| || ||| Sbjct 2859875 CTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTTTGCTTCGATCTTC 2859816 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || |||||||| ||||| | || || ||||||||||||||||| Sbjct 2859815 TGGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCTCGT 2859756 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAA 64889 || ||||| || ||| || ||||| | |||||| ||||||||| Sbjct 2859755 GATGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCCCACCTCAA 2859706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310164746960