Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq7 111 1e-19
seq1 93.3 3e-14
>seq7
Length=1958609
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
|||| ||||||||||||||||| || || || || || || || || || |||| |||
Sbjct 430500 ACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAGAGCGTGCGACCGTCCTCA 430559
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| || || || || || || || ||||| ||||| || || | ||||||||||| |
Sbjct 430560 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 430619
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||| || | || ||| | |||||||| |||||| || |||| || || || ||
Sbjct 430620 ATC-TTGCTCTTCACGTTGTCGATTGTGTCAGAGCTCTCGACCTCCAGCGTAATGGTCTT 430678
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| | || ||||| || ||||||||
Sbjct 430679 TCCGGTCAGAGTCTTCACGAAGATCTGCAT 430708
Score = 91.5 bits (100), Expect = 9e-14
Identities = 141/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| || | ||||||||||||||||| || |||||||| || ||||| || ||
Sbjct 430947 AGACGCAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGGGTGCGG 431006
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | ||||| ||||| || || | ||||||
Sbjct 431007 CCATCCTCGAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATACCCTCC 431066
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666
||||| |||| || | || ||| | || ||||| ||| |||||| |||| ||
Sbjct 431067 TTGTCCTGGATC-TTGGACTTGACGTTGTCGATGGTGTCGCTCG-ACTCCACCTCCAGGG 431124
Query 34667 TTATCGTTTTACCGGT 34682
| || || || |||||
Sbjct 431125 TGATAGTCTTGCCGGT 431140
Score = 84.2 bits (92), Expect = 1e-11
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| ||||| || || ||||| | || || | || || || || ||||| || ||
Sbjct 430745 CTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAA 430804
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| | |||||| |||||||| || | ||||||||||| ||| ||| | || |||
Sbjct 430805 GATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGAT-TTTCGACTTCACGT 430863
Query 34635 TA-AAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692
|| || || ||| || | || ||||| | ||| || || || ||||| | || ||
Sbjct 430864 TATCGATGGTATCTGACGAT-TCGACTTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTG 430922
Query 34693 ACAAAAATCTGCAT 34706
|| |||||||||||
Sbjct 430923 ACGAAAATCTGCAT 430936
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || ||| |||||| || |||||||| || || || || ||
Sbjct 431232 AGACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGCGTGCGA 431291
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || || || || || || || ||||| ||||| || || | ||||||
Sbjct 431292 CCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATACCCTCC 431351
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 431352 TTGTCCTGGATCTT 431365
>seq1
Length=6618042
Score = 93.3 bits (102), Expect = 3e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| ||||| ||||| || |||||| || ||||| ||||| || || || ||
Sbjct 1741412 AGGCGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGG 1741353
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || ||||| || || || | |||||| |||||||| || | ||||||
Sbjct 1741352 CCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCC 1741293
Query 34609 TTGTCTGTG 34617
|||||||||
Sbjct 1741292 TTGTCTGTG 1741284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729473419689
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |