Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq7 111 1e-19 seq1 93.3 3e-14 >seq7 Length=1958609 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||||||||||||||||| || || || || || || || || || |||| ||| Sbjct 430500 ACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAGAGCGTGCGACCGTCCTCA 430559 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || || ||||| ||||| || || | ||||||||||| | Sbjct 430560 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 430619 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | || ||| | |||||||| |||||| || |||| || || || || Sbjct 430620 ATC-TTGCTCTTCACGTTGTCGATTGTGTCAGAGCTCTCGACCTCCAGCGTAATGGTCTT 430678 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || ||||| || |||||||| Sbjct 430679 TCCGGTCAGAGTCTTCACGAAGATCTGCAT 430708 Score = 91.5 bits (100), Expect = 9e-14 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||||||||||||||||| || |||||||| || ||||| || || Sbjct 430947 AGACGCAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGGGTGCGG 431006 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | ||||| ||||| || || | |||||| Sbjct 431007 CCATCCTCGAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATACCCTCC 431066 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || ||| | || ||||| ||| |||||| |||| || Sbjct 431067 TTGTCCTGGATC-TTGGACTTGACGTTGTCGATGGTGTCGCTCG-ACTCCACCTCCAGGG 431124 Query 34667 TTATCGTTTTACCGGT 34682 | || || || ||||| Sbjct 431125 TGATAGTCTTGCCGGT 431140 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| ||||| || || ||||| | || || | || || || || ||||| || || Sbjct 430745 CTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAA 430804 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | |||||| |||||||| || | ||||||||||| ||| ||| | || ||| Sbjct 430805 GATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGAT-TTTCGACTTCACGT 430863 Query 34635 TA-AAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 || || || ||| || | || ||||| | ||| || || || ||||| | || || Sbjct 430864 TATCGATGGTATCTGACGAT-TCGACTTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTG 430922 Query 34693 ACAAAAATCTGCAT 34706 || ||||||||||| Sbjct 430923 ACGAAAATCTGCAT 430936 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| |||||| || |||||||| || || || || || Sbjct 431232 AGACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGCGTGCGA 431291 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || || ||||| ||||| || || | |||||| Sbjct 431292 CCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATACCCTCC 431351 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 431352 TTGTCCTGGATCTT 431365 >seq1 Length=6618042 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||||| || |||||| || ||||| ||||| || || || || Sbjct 1741412 AGGCGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGG 1741353 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || ||||| || || || | |||||| |||||||| || | |||||| Sbjct 1741352 CCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCC 1741293 Query 34609 TTGTCTGTG 34617 ||||||||| Sbjct 1741292 TTGTCTGTG 1741284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729473419689