Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 172 1e-37 seq3 109 1e-18 seq1 98.7 2e-15 >seq7 Length=1958609 Score = 172 bits (190), Expect = 1e-37 Identities = 172/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| || || ||||| |||||| ||| || ||||| || || || | || || Sbjct 430487 ACGGAGTCTGAGAACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAGAGCGT 430546 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| | ||| || ||||| || || | || Sbjct 430547 GCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACC 430606 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| |||||||| ||||| ||||||||||| || ||||| || Sbjct 430607 CTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATTGTGTCAGAGCTCTCGACCTCCAG 430666 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || |||||||| || |||||||| || || | ||||||| Sbjct 430667 CGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 430709 Score = 168 bits (186), Expect = 2e-36 Identities = 160/203 (79%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| |||||| ||| || ||||||||||| || | |||||| | ||||| Sbjct 430953 AGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGGGTGCGGCCATCC 431012 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||||||||||||||| ||||| || ||||| || || | || ||||||||| Sbjct 431013 TCGAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 431072 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| ||||||||||| ||| || ||||| || ||||| Sbjct 431073 TGGATCTTGGACTTGACGTTGTCGATGGTGTC---GCTCGACTCCACCTCCAGGGTGATA 431129 Query 211080 GTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| || ||||| ||||| || Sbjct 431130 GTCTTGCCGGTGAGGGTCTTGAC 431152 Score = 165 bits (182), Expect = 2e-35 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||||||||| || || ||||| || || || || || || | | Sbjct 430712 TCCACGCAGGCGGAGGACAAGGTGCAGTGTAGACTCCTTCTGAATATTGTAGTCTGACAA 430771 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| ||||||||||| || ||||||||||| || || ||||| || |||| Sbjct 430772 GGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAAT 430831 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||||||||| || |||||||| |||||||| || || ||| || || Sbjct 430832 ACCCTCCTTGTCCTGGATTTTCGACTTCACGTTATCGATGGTATCTGACGATTCGACTTC 430891 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || || |||||||| ||||| ||||| || || | ||||||| Sbjct 430892 GAGGGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCATT 430937 Score = 134 bits (148), Expect = 3e-26 Identities = 145/191 (76%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| |||||||| || ||||||||||| || | || || | || || Sbjct 431238 AGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGCGTGCGACCGTCC 431297 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | || ||||||||| Sbjct 431298 TCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 431357 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| ||||||||||| ||| || ||||| || ||||| Sbjct 431358 TGGATCTTGGACTTGACGTTGTCGATGGTGTC---GCTCGACTCCACCTCAAGGGTGATA 431414 Query 211080 GTCTTTCCCGT 211090 ||||| || || Sbjct 431415 GTCTTGCCGGT 431425 >seq3 Length=4355815 Score = 109 bits (120), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || || || | ||||| || |||||||| || ||||||||| Sbjct 2043493 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATA 2043552 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||| || || | || ||||||||||| ||||| || ||||| ||| Sbjct 2043553 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCG 2043612 Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 |||||||| ||| || || ||||| || || ||||| ||||| || ||||| || Sbjct 2043613 ATGGTGTC---GCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 2043669 Query 211104 AA 211105 || Sbjct 2043670 AA 2043671 >seq1 Length=6618042 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 178229 TACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCA 178288 ||||| | ||| || ||||||| ||| || || |||||| |||| || |||||||| Sbjct 2615593 TACTTGTGGTAAAGAGCCTCGAACTCCTCGCCGTACACATCAGCGAGGCCAGGAGCCTCG 2615652 Query 178289 TTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAG 178348 ||||||||||| || |||| | ||||| ||| || || |||||||||||||| | Sbjct 2615653 TTGGGGCAGAACAGTGTCCAGTCACCGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGA 2615712 Query 178349 GTCCAGATGGCATAGAA 178365 ||||||| || ||||| Sbjct 2615713 GTCCAGAGAGCGTAGAA 2615729 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| ||||||| ||||| | || || Sbjct 1741406 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 1741347 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||||||||| || |||||||| || || || ||||| || || | || |||||||| Sbjct 1741346 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 1741288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151509896045