Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq7 141 2e-28
seq3 107 5e-18
seq1 91.5 4e-13
>seq7
Length=1958609
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| || || || || || || | |||||| || | ||| || | |||||
Sbjct 430725 AGGACAAGGTGCAGTGTAGACTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCC 430784
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||||||||| || || ||||| || |||||||| ||||||||
Sbjct 430785 TCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 430844
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||| || |||||| |||||||| ||||| | ||| || || | || || |||
Sbjct 430845 TGGATTTTCGACTTCACGTTATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGTC 430904
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || || | || || | ||| | ||||||
Sbjct 430905 TTTCCGGTGAGGGTCTTGACGAAAATCTGCATT 430937
Score = 136 bits (150), Expect = 9e-27
Identities = 164/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| ||||| || || |||||||||||| || || |||| |||||| |||| | ||
Sbjct 430487 ACGGAGTCTGAGAACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAGAGCGT 430546
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || |||||||| | || || ||||| || || |||||
Sbjct 430547 GCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACC 430606
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| |||||| ||||| ||||| ||| | || || || |
Sbjct 430607 CTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATTGTGTCAGAGCTCTCGACCTCCAG 430666
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||| || ||||| || |||| ||| || | ||| | ||||||
Sbjct 430667 CGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 430709
Score = 123 bits (136), Expect = 6e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||||||||||||||||||| || || |||| || || |||| | ||
Sbjct 430943 ACGCAGACGCAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAAAGGGT 431002
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| || |||||||| || || || ||||| || || |||||
Sbjct 431003 GCGGCCATCCTCGAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATACC 431062
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| || ||||||||||| | ||||| || |
Sbjct 431063 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTCGACTCCACCTCCAG 431122
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 431123 GGTGATAGTCTTGCCGGT 431140
Score = 104 bits (114), Expect = 6e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| || ||||| || || |||| || || |||| | || | || ||
Sbjct 431238 AGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGCGTGCGACCGTCC 431297
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| || || ||||| ||||||||
Sbjct 431298 TCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 431357
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| | ||||| || | ||||| |||
Sbjct 431358 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTC 431417
Query 225682 TTGCCCGTCA 225691
||||| ||||
Sbjct 431418 TTGCCGGTCA 431427
>seq3
Length=4355815
Score = 107 bits (118), Expect = 5e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| ||| || ||| | ||||| || |||||||| ||||||||||||
Sbjct 2043493 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATA 2043552
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || ||||| || || ||||| |||||||| || ||||| ||| || |||
Sbjct 2043553 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCG 2043612
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| | || ||||| | || || ||||| ||||||| || || | |||
Sbjct 2043613 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 2043671
>seq1
Length=6618042
Score = 91.5 bits (100), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || |||||||| || || || || |||| |||||||| | | ||
Sbjct 1741416 ACGCAGGCGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGT 1741357
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| || || || ||||| || || |||||
Sbjct 1741356 GCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACC 1741297
Query 225612 TTCCTTGTCT 225621
|||||||||
Sbjct 1741296 CTCCTTGTCT 1741287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530695782902
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |