Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7 111 4e-19 seq3 86.0 1e-11 >seq7 Length=1958609 Score = 111 bits (122), Expect = 4e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || |||||||| || || || ||||| || | || || | ||||| Sbjct 430724 GAGGACAAGGTGCAGTGTAGACTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATC 430783 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||||||||| | ||||||||||| | || || ||||| || Sbjct 430784 CTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTC 430843 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || ||||| || || | || | | | ||||| || ||||| || ||||| || Sbjct 430844 CTGGATTTTCGACTTCACGTTATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGT 430903 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| ||||| ||||| | ||||||| Sbjct 430904 CTTTCCGGTGAGGGTCTTGACGAAAATCTGCATT 430937 Score = 104 bits (114), Expect = 5e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||||||| || || || ||||| ||| || ||||| ||||| |||| | || | Sbjct 430490 GAGTCTGAGAACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAGAGCGTGCG 430549 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || |||||||| | | ||||||||| | | ||| || || Sbjct 430550 ACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTC 430609 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || || || | || | |||| || ||||| || || || || Sbjct 430610 CTTGTCCTGGATCTTGCTCTTCACGTTGTCGATTGTGTCAGAGCTCTCGACCTCCAGCGT 430669 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || || || |||||||||||||||| ||||||| Sbjct 430670 AATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 430709 >seq3 Length=4355815 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| ||| | ||| | ||||| || || || || ||||||||| Sbjct 2043493 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATA 2043552 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||||| | ||| || ||||| || ||||| || ||||| | || Sbjct 2043553 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCG 2043612 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| ||| || || || ||||| || || ||||| || ||||| |||||| Sbjct 2043613 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAG 2043672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820312150143