Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7 168 1e-36 seq3 134 3e-26 seq1 102 2e-16 seq2 98.7 2e-15 >seq7 Length=1958609 Score = 168 bits (186), Expect = 1e-36 Identities = 179/231 (77%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || ||||| || | ||||| || || ||||| |||||||| | Sbjct 430481 ACCACCACGGAGTCTGAGAACCAGGTGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGA 430540 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| || ||||| || || || || || |||||||| || || ||||| || Sbjct 430541 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGTGG 430600 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCT-TCG 283049 |||||||||||||| |||||| ||||| || ||| | ||||| ||||| | |||| ||| Sbjct 430601 GATACCCTCCTTGTCCTGGATC-TTGCTCTTCACGTTGTCGATTGTGTCAG-AGCTCTCG 430658 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || || || ||||| || |||| |||||| ||||| ||||||||| Sbjct 430659 ACCTCCAGCGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATT 430709 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || ||||||||||| || || || || | || || || || || |||||||| | | Sbjct 430710 CCTCCACGCAGGCGGAGGACAAGGTGCAGTGTAGACTCCTTCTGAATATTGTAGTCTGAC 430769 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || || || ||||| | ||| || ||||| || Sbjct 430770 AAG-GTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCCGGGGG 430828 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| ||||| || | || ||| ||||||| || || || | |||||| Sbjct 430829 AATACCCTCCTTGTCCTGGATTTTCGACTTCACGTTATCGATGGTATCTGACGATTCGAC 430888 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||||| || || ||||| || || | ||||| ||||| ||||||||| Sbjct 430889 TTCGAGGGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCATT 430937 Score = 143 bits (158), Expect = 6e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || || || || | ||||| || || |||||||| ||||| | | Sbjct 430938 CCACCACGCAGACGCAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAA 430997 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || ||||||| || || ||||| || Sbjct 430998 AGGGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 431057 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || ||| | ||||| ||||| | || || Sbjct 431058 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTCGACTCCACC 431117 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || || ||||| ||||| || || | ||||| |||| Sbjct 431118 TCCAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 431154 Score = 131 bits (144), Expect = 4e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| ||||| || | ||| || || |||||||| ||||| | Sbjct 431223 CCACCACGGAGACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 431282 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || |||||||| || || ||||| || Sbjct 431283 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGGG 431342 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || ||| | ||||| ||||| | || || Sbjct 431343 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGCTCGACTCCACC 431402 Query 283053 TCGAGAGTGATCGTCTTACCCGTCA 283077 || || ||||| ||||| || |||| Sbjct 431403 TCAAGGGTGATAGTCTTGCCGGTCA 431427 >seq3 Length=4355815 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| || |||||||||||||| || || || || || ||||| Sbjct 2043493 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATA 2043552 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| || ||||| || |||||||||||||| || ||||| || || ||| | ||| Sbjct 2043553 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCG 2043612 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| | ||||| ||||| || || ||||||||||||| ||||| ||||| Sbjct 2043613 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 2043671 >seq1 Length=6618042 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | || || || ||||||||||| || | Sbjct 1741422 ACCACCACGCAGGCGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 1741363 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||| ||| || ||||| || Sbjct 1741362 GAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGG 1741303 Query 282992 AATACCCTCCTTGTCT 283007 ||||||||||||||| Sbjct 1741302 GATACCCTCCTTGTCT 1741287 >seq2 Length=4789688 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 230229 GGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTG 230288 |||||||| || | |||||| | || || ||||| ||||| ||||| || || ||||| Sbjct 2859608 GGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGACTTCTCGTG 2859549 Query 230289 GCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATT 230348 || || || || |||| || ||| ||| || ||||||| || ||||| ||| Sbjct 2859548 GCTCTTGGCAACAAGAAGTACTACAACGCCACCAATCCCTTCGACTTCATGGACAACATC 2859489 Query 230349 TCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGT 230408 || || || || || ||||||||||| ||||||||| | || || || | | ||||| Sbjct 2859488 TCGCTGTCCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCCGGT 2859429 Query 230409 GT 230410 || Sbjct 2859428 GT 2859427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738757425582