Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq90 129 1e-24 seq259 86.0 1e-11 >seq90 Length=200924 Score = 129 bits (142), Expect = 1e-24 Identities = 181/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 230384 AAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTC 230443 ||||||| || || || || | | |||||||| ||| | || || | || || Sbjct 194475 AAATCATCACCGACGCCGTCGTCATTGAAAAGGAATTCCTGACCGAGGCCCTGCCCTGCG 194534 Query 230444 GCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCA 230503 ||| | ||||||||||| || || ||| |||||||| || || || |||||||| Sbjct 194535 CCCTGCTCGGCATGAACGCCGATCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTC 194594 Query 230504 TTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGG 230563 | | ||||| || || |||| || || ||| ||| | ||||||||||| || |||| Sbjct 194595 TGCTGGTTGCCCTCGGCAACGACAAGGTCTACCGCTCCACGAACCCCTTTGACTTCATGG 194654 Query 230564 AGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || ||| ||||| || |||||||||||||| || |||||||| ||||| |||| Sbjct 194655 AGAACATCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCAGA 194714 Query 230624 GGCCTGGTGTGATG 230637 | |||||||| || Sbjct 194715 AGGCTGGTGTGTTG 194728 >seq259 Length=20262 Score = 86.0 bits (94), Expect = 1e-11 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 319390 TCGGGACGCTTCTTC-ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTT 319448 ||||| ||| |||| || ||| | | ||| || || | |||| | |||||| ||| Sbjct 16127 TCGGGCCGCA-CTTCGACAAACGCCGCCAGGTTGCCGTGGTACAGCGCCAGCTTCTTGTT 16069 Query 319449 AGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACAC 319508 | ||||| ||| |||| || || |||| ||||| || |||||| || || Sbjct 16068 GGTCTCGTAGTGGTAAATATCAGTCGTCACCTCGTCCAGGAATCCACTGTCGTGAGAAAC 16009 Query 319509 AATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGA 319568 ||||| ||| || |||| | | | ||||| | || |||| | ||||| | Sbjct 16008 AATCAGCGACGTAATGTCCGGGTGCGTCTTGAGGTAGTTCTCCAGCCACTTGACGTTGGC 15949 Query 319569 CACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGC 319628 ||| | |||||||||||||||||| || ||||| | | || || | ||||| || Sbjct 15948 AACATCCAAATGGTTGGTCGGCTCGTCCAGCAGCAGCACGTCGGCCTTTTGCAGCATGGC 15889 Query 319629 ACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 ||| || ||||| || ||||| ||||| || || || || Sbjct 15888 ACGCGCCAGAGCCAGCTTCATCTTCCAACCACCCGACAG 15850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057816667626830