Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq90 111 2e-19 >seq90 Length=200924 Score = 111 bits (122), Expect = 2e-19 Identities = 344/529 (65%), Gaps = 19/529 (4%) Strand=Plus/Minus Query 17000 ATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATC 17059 || || ||||| ||||| |||| ||||||||| || || || | ||| || || Sbjct 194388 ATCAGCTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATG 194329 Query 17060 GCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCG 17119 | ||| || | || || ||||| || |||||||||| ||||| || | | || | | Sbjct 194328 GAGGCAAAGGCGCCCGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCCACCAGACGCTGG 194269 Query 17120 GCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATG 17179 || | |||| || | |||||| || | |||| ||||| || | ||| Sbjct 194268 GCAAAGGTCGACTCGCGATCGGAAATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATG 194209 Query 17180 CAATCCATCGTTTCTATGGCCTTAAA----TAATTTCTCTTTTTCCTGTAGG-TCGATTA 17234 || || || || ||||| || || || | | || | ||| || | | Sbjct 194208 CAGGGAATGGTGTCGATGGCGTTGAACAGGTAGCTGCGCTGG-----GCAGGCTCCTTGA 194154 Query 17235 TATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAA 17294 | ||||| |||||||| || |||| | || ||||| ||||||||||| ||||| | Sbjct 194153 TGTACGTGTCGATGAGCAGCGAGTACGTCTCCGAGTGGATGTTCTCCATCATGATCTGGA 194094 Query 17295 ATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGAT 17354 | ||||| ||||| ||||| || | || || || || | |||| || || | || | Sbjct 194093 AGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTCGCCCGAGAAACGCTCAACCAGGT 194034 Query 17355 TTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATT 17414 | ||||| || |||||||| || || ||||| |||| | ||| |||||||| | Sbjct 194033 TCTCGTTGACAATGCCGTCCGAGGCAGCAAAAAAGGCCAGGACGTGCGAGATGAAATACT 193974 Query 17415 TTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTT 17468 | || ||| ||| | ||| |||||| | | ||| ||||| | ||| | | Sbjct 193973 TCTCATCC-TTGT--TCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCT 193917 Query 17469 CTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 | |||| ||||| ||| ||| | ||||| || ||||| | ||| || Sbjct 193916 CCTCGGCCGTCCAGAAAGACGCCTCGGCCTTCTTGTACATCTGCCAGAT 193868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517542100097880