Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq90 104 3e-17 >seq90 Length=200924 Score = 104 bits (114), Expect = 3e-17 Identities = 360/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| || || ||||| | ||| | ||||||||||| || || Sbjct 194424 CAGGCAAAGTCGGTGTGCAGGCCTTCGTCGCGCGAAATCAGCTCGTTGGAAAAGGTCAGA 194365 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || |||||||| ||||| || ||||| ||||| | || || ||||| Sbjct 194364 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCAAAGGCGCCCGAGAAGAAG 194305 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-ACCG--GCGCTGTCATGT 24311 || || || || || |||||||| | || | | || | || ||| || Sbjct 194304 ATGCCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGATCGGAA 194245 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||||| | ||||| |||||||| | || || || || || || || || Sbjct 194244 ATCCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATGGTGTCGATGGCGTTG 194185 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 || || ||| | | | || || | || || || || | || ||| | Sbjct 194184 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTACGTGTCGATGAGCAGCGAGTACGTC 194125 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 ||||| || ||||| || || || || || |||||||| || | ||||||| ||| Sbjct 194124 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 194065 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || || || | || || || | | || || || || || ||||| ||| ||| Sbjct 194064 TGGACCTCGCCCGAGAAACGCTCAACCAGGTTCTCGTTGACAATGCCGTCCGAGGCAGCA 194005 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 24608 ||||| |||| || || || ||||| || || | || || | | || ||||| Sbjct 194004 AAAAAGGCCAGGACGTGCGAGATGAAATACTTCTCATCCTTGTTCATGCGGTTGTTCCAG 193945 Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668 || | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 193944 TCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGACGCCTCGGCCTTC 193885 Query 24669 TTATACATATTCCAGAT 24685 || ||||| | |||||| Sbjct 193884 TTGTACATCTGCCAGAT 193868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717584957680