Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq90 403 2e-107 seq13 129 6e-25 seq88 114 1e-20 seq131 105 7e-18 >seq90 Length=200924 Score = 403 bits (446), Expect = 2e-107 Identities = 577/803 (72%), Gaps = 15/803 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||||||||||| |||||||| | ||||||| | || ||| Sbjct 193868 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACGGCCGAGGAGATTGATCTG 193927 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||||| | | ||| |||||||| Sbjct 193928 TCCAAGGATCTCCA-CGACTGGAACAACCGCATGAACAAGGATGAGAAGTATTTCATCTC 193986 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 |||||| ||||||||||| || ||| |||||||| ||||||||||| ||||| ||||| Sbjct 193987 GCACGTCCTGGCCTTTTTTGCTGCCTCGGACGGCATTGTCAACGAGAACCTGGTTGAGCG 194046 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 |||| | ||||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 194047 TTTCTCGGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 194106 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | |||||||| | ||| ||| ||||||||||||||| | | || || Sbjct 194107 GGAGAACATCCACTCGGAGACGTACTCGCTGCTCATCGACACGTACATCAAGGAGC-CTG 194165 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || | |||| | | ||| ||||||||||| || || || ||| || |||| Sbjct 194166 CCCAGC-GCAGCTACCT--GTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAAGG 194222 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| || ||||| ||| | ||| | |||| | | |||| ||||||| Sbjct 194223 CCGACTGGGCCCTCAAGTGGATTTCCGATCGCGAGTCGACCTTTGCCCAGCGTCTGGTGG 194282 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || |||||||||||| ||||||| |||||| || ||| |||| || ||||| Sbjct 194283 CCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTTGCCTCCATTTTCTGGCTGC 194342 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || || || || |||||||| ||||| || ||||||||| || || | ||||| | Sbjct 194343 GCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGAAG 194402 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 | ||||| |||||||||||| |||| ||| ||| || | || || ||| | Sbjct 194403 GCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACAACCGCCCCAGCAAGA 194462 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 || ||| ||| ||| |||||||||| |||| ||| || || ||||| ||||| | Sbjct 194463 AGCTCGTTGAGGAAATCATCACCGACGCCGTCGTCATTGAAAAGGAATTCCTGACCGAGG 194522 Query 117288 CGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | ||||| |||| ||||| || | || ||| ||| ||| ||||| ||||| Sbjct 194523 CCCTGCC-CTGCGCCCTGCTCGGCATGAACGCCGATCTCATGAAGCAGTACATTGAGTTT 194581 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||||||| | |||||| | | || | | || |||| |||| | | | ||||| Sbjct 194582 GTCGCCGACCGTCTGCTGGTTGCCCTCGGCAACGACAAGGTCTACCGCTCCACGAACCCC 194641 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | |||||| Sbjct 194642 TTTGACTTCATGGAGAACATCTC 194664 >seq13 Length=236849 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| || || ||||| ||||| ||||||||| |||| ||||| | | || | | Sbjct 136030 TAGTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAAGTCGAGTCGTCGGATACCA 135971 Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | |||| ||||| || || | ||||| |||||||| || |||||||||| || Sbjct 135970 TCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGT 135912 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 | || | ||| ||||| ||||| || || | ||||| ||| ||||||||||||||| Sbjct 135911 TTGATTTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACGCTCTCGGACTACAACATCCAG 135852 Query 40876 AAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||| | || ||||| || ||| ||||| Sbjct 135851 AAGGAGTCTACTCTGCACCTGGTGCTGCGC 135822 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || || | Sbjct 135581 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATCACTCTGGAGGTGGAGTCCTCG 135522 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||| ||| |||||||| Sbjct 135521 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 135462 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || |||||||| || | ||||| || |||||||||| Sbjct 135461 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACACTGTCCGACTACAAC 135402 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || ||||| || || |||| || | |||||| Sbjct 135401 ATCCAGAAGGAGTCGACCCTGCACCTGGTTCTGCGTCTGCGTGGCGGC 135354 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || || | Sbjct 135809 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATCACTCTGGAGGTGGAGTCCTCG 135750 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||| || |||||||| Sbjct 135749 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 135690 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 135689 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACGCTCTCGGACTACAAC 135630 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| | || ||||| || ||| ||||| Sbjct 135629 ATCCAGAAGGAGTCTACTCTGCACCTGGTGCTGCGC 135594 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 |||||||| ||||||||| | || || ||| | |||||| | | |||| ||||| Sbjct 136297 ACGGGCAAGACCATCACCCTTGAGGTGGAATCTTCCGACACTATCGACAACG-TCAAGTC 136239 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| ||||| |||||||||| || || |||| || || || Sbjct 136238 GAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGCCTGATCTTTGCTGGTAA 136179 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| || | ||||| || |||||||||||||||||||||| | || || || Sbjct 136178 GCAGCTGGAGGATGGCCGCACACTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCA 136119 Query 40893 TCTAGTGTTGCG 40904 || ||| |||| Sbjct 136118 CCTTGTGCTGCG 136107 >seq88 Length=56780 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || || ||| |||| || || || Sbjct 28097 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 28156 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | ||||| || || | || || |||||||| ||| |||| Sbjct 28157 TCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGAT 28216 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 28217 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 28276 Query 40867 AACATCCAGAAGG 40879 ||||||||||||| Sbjct 28277 AACATCCAGAAGG 28289 >seq131 Length=44026 Score = 105 bits (116), Expect = 7e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 31279 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 31338 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 31339 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 31397 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| || ||||| ||||| || || | ||||| || |||||||||||| ||||| Sbjct 31398 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATTCAGAA 31457 Query 40878 GG 40879 || Sbjct 31458 GG 31459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215715830160