Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq90 129 5e-25 seq13 129 5e-25 seq88 123 2e-23 seq131 111 1e-19 >seq90 Length=200924 Score = 129 bits (142), Expect = 5e-25 Identities = 352/533 (66%), Gaps = 21/533 (4%) Strand=Plus/Plus Query 44778 TCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATG 44837 |||| | || |||||| | ||| | |||||||| ||||| | |||| ||| |||| Sbjct 194193 TCGACACCATTCCCTGCATCCGCCGCAAGGCCGACTGGGCCCTCAAGTGGATTTCCGATC 194252 Query 44838 AAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT 44897 || || || ||| | || |||| || || ||| ||||| || | ||||| | Sbjct 194253 GCGAGTCGACCTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCT 194312 Query 44898 CGGGGAGTTTTGCGGCGATATTTTACATGAAAACCAAGGGAG---TGATGCCCGGACTGA 44954 |||| ||||| | || || | || |||| | | |||||||||| |||| Sbjct 194313 CGGGCGCCTTTGCCTCCATTTTCTGGCTGCG---CAAGCGTGGTCTGATGCCCGGTCTGA 194369 Query 44955 CGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCT-C 45013 | ||| |||||| |||||||| | |||||||| ||||||||| ||||||||||||| | Sbjct 194370 CCTTTTCCAACGAGCTGATTTCGCGCGACGAAGGCCTGCACACCGACTTTGCCTGCCTGC 194429 Query 45014 TACTATAATACGAGAGTCGA--TCAAAAGTTGGACGCGCCCACCGTCAACGACATGTTCT 45071 | | | || || | | | || || || ||| | || || || Sbjct 194430 TCTTCTCGCACCTGA-ACAACCGCCCCAGCAAGAAGC-----TCGTTGAGGAAATCATCA 194483 Query 45072 CCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGG 45131 |||| ||||| | ||| || | |||||| | | ||||| |||||| | || | | Sbjct 194484 CCGACGCCGTCGTCATTGAAAAGGAATTCCTGACCGAGGCCCTGCCCTGCGCCCTGCTCG 194543 Query 45132 GAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGT-- 45189 | |||||||| || | |||| |||||||||||||||||||||| ||||| || || Sbjct 194544 GCATGAACGCCGATCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTG 194603 Query 45190 -CCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATA 45248 || || | |||| | ||| | |||||| || || || ||| | || | Sbjct 194604 CCCTCGGCAACGA---CAAGGTCTACCGCTCCACGAACCCCTTTGACTTCATGGAGAACA 194660 Query 45249 TTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301 | ||| ||| ||||| || || || |||||||| || || | ||| ||| || Sbjct 194661 TCTCGCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACCAG 194713 >seq13 Length=236849 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| || ||||| |||||| Sbjct 135373 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGGCCATCCTCC 135432 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 135433 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 135492 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| | ||| ||||| | || | || ||| Sbjct 135493 ATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCCAGAGTGATGGTCTTG 135552 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||| |||||||| Sbjct 135553 CCGGTAAGAGTCTTGACAAAGATCTGCAT 135581 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||| ||| | |||||||| || || |||||||| || Sbjct 135581 TACCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCG 135640 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| || ||||| || |||||| | || ||||||||||| || |||| Sbjct 135641 AGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGAG 135700 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | |||| |||||||| | ||| | Sbjct 135701 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCA 135760 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || |||||||| ||||| || ||||| |||||||| Sbjct 135761 CCTCCAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 135809 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||| ||| | |||||||| || || |||||||| || Sbjct 135809 TACCACCACGGAGGCGCAGCACCAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCG 135868 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| || ||||| || |||||| | || | ||||||||| || |||| Sbjct 135869 AGAGCGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGAG 135928 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | |||| ||| |||| ||||| Sbjct 135929 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGA 135988 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 | |||| ||| | || |||||||| || || || || Sbjct 135989 CTTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 136025 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||| | ||||| |||||||| || || |||||||| ||| Sbjct 136093 TACCACCACGGAGACGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 136152 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| |||||| ||||| || ||||| |||| || |||||||| || |||| Sbjct 136153 ACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAG 136212 Query 118630 GTATGCCCTCCTTGTC 118645 | || ||||||||||| Sbjct 136213 GGATACCCTCCTTGTC 136228 >seq88 Length=56780 Score = 123 bits (136), Expect = 2e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || |||||| |||||| ||||| || |||||| |||| Sbjct 28287 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 28228 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||||||||| || || ||||||||||| || || || || || | ||| Sbjct 28227 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 28168 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| | ||| ||||||| ||| | ||| || || || || || || || ||| Sbjct 28167 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 28108 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 28107 ATCTGCAT 28100 >seq131 Length=44026 Score = 111 bits (122), Expect = 1e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || |||||| |||||| ||||| || ||||| |||| Sbjct 31457 TTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 31398 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || || || |||||||||||||| || || || || | ||| Sbjct 31397 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 31338 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || || || ||||| || || || ||| Sbjct 31337 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 31278 Query 118731 ATCTGC 118736 | ||| Sbjct 31277 CTGTGC 31272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827539566372