Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq21 127 3e-24 >seq21 Length=78807 Score = 127 bits (140), Expect = 3e-24 Identities = 450/699 (64%), Gaps = 18/699 (3%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||||| | ||| || || | || || || ||||| || Sbjct 61388 AGGGCACTCGTTGGGGCACATCAGAGTCCAGTCCGAGTTCTTCTCAACACGCTTCATGAA 61329 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||| ||||| ||||| || || | || || || | | | ||||| || || Sbjct 61328 GAGGTCAGGGATCCACAGCGCCAGGAAAAGGTCACGGGCGCGGACCTCCTCCTTGCCGTG 61269 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| || || ||||| | | | ||| | |||||||| |||| ||| ||||| Sbjct 61268 GTTCTTGCGCAGGTCAAGGAAGTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGC 61209 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | ||||| || ||||| || |||||||| | ||| | || ||||| || | || Sbjct 61208 AAAGGCACCAGGGCGCTTGTTGCCGCCCTGATCGACGTAGCGGGCAGTGTTGTTGAACAC 61149 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | || ||| ||||| |||||||| || |||| ||||| |||| || || ||| | Sbjct 61148 ACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAGCCAGT 61089 Query 63521 GGCACGAAT---ATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 |||||| || || || ||||| | || || || || ||||| || ||||| | | Sbjct 61088 GGCACGGATGCGATGGAC--ATTGA--GTCCGATACCACCGGCCATCTTGGAGATCATAG 61033 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | || || | || || || ||||| || || || || |||||| || || | Sbjct 61032 CACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGA 60973 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 | || |||| ||| | | || || || || || | || || || ||||| | Sbjct 60972 AGCAAGATGACAGCTGGGCCTGGGGCGTACCAGCGTTGAACAGAGTGGGCGAGGCGTGGG 60913 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC-----TGAGTCTATATCCCA 63751 | || | || || | || ||||||||||||||| | | ||| | ||| Sbjct 60912 TGAAGAACTTGCTCGACATGAGGTTGTACGTCTCAATAACACGATCAACTCTGTCGCCC- 60854 Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 ||| || || || |||||||| | ||||||||| || | || ||||| ||| Sbjct 60853 ----CAAATGCCAACAGCCACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCC 60798 Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63871 || || |||| || ||| || || | ||| || || ||||| || | ||| || Sbjct 60797 GTCTAGCTTCAGCAGGTACGAACGCTCTAGAGTCTTGAAGCCAAAGTACTGGTAGTTGAA 60738 Query 63872 GTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 ||| || ||||| | ||| | || | |||| ||||| Sbjct 60737 GTCACGGTCGTACACAATGGCAGAGTCCAGCTCTTCCTT 60699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813340858480