Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq180 114 1e-20 >seq180 Length=32333 Score = 114 bits (126), Expect = 1e-20 Identities = 211/302 (70%), Gaps = 8/302 (3%) Strand=Plus/Plus Query 21110 CACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 |||||||||||| | |||| | |||||| || || || |||||| | | ||||| | Sbjct 9222 CACGTAAAACTG-CGCAAACATGTGACACGGTGGCAGCGCCATCTTCTTCAAATCCGCCG 9280 Query 21169 GGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCA 21228 | |||||||| | ||| | |||||| ||||||| || | || | | ||||| Sbjct 9281 GATTCCACGCACTCATGATGATGCGTCGATCGTACGGAGTATTCTTCAGCTTGTGCACCA 9340 Query 21229 CGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTG--TACTC 21286 | | |||||| || || ||||||||| ||||| |||| || | | ||||| Sbjct 9341 CCTCCGCCAGCTGATCGACGCCCTGACCCGTGTAGTC--CGTCTGCGCATCGACATACTC 9398 Query 21287 CGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTC 21346 || |||||||| | |||||||||||||||||| || |||| ||||||||| |||| Sbjct 9399 TGCGCCAAAATGCCGCCACTGGAACCCGTACACGGGGCCCAAATCGCCCTCAGCCCGGTG 9458 Query 21347 CCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGC 21405 || | |||| ||| | | | | ||||| ||||| | ||||||| || || | || Sbjct 9459 GCCCAGGCCC-ACGCTGTCGAGGTACGCGCGCGACCCATTGCCGTCCCAGATCTTGATGC 9517 Query 21406 CG 21407 || Sbjct 9518 CG 9519 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 20877 ATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACG 20936 ||||| ||| |||| |||| ||||| | | ||| ||| | | |||| | || ||| Sbjct 8893 ATCTTGAGCAGCGGGAACGCGCGCGGCTCGCGCTGCACCTGCACCTGCAGCGCGTCGACG 8952 Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC-AGGCC 20995 |||| | ||| ||||| ||||| |||| | |||| | | || ||||| | || | Sbjct 8953 TGGTCGGCGTACACGTGCGCGTCGCCCATGACGTGCGTCAGG-CTGCCGGGTACGAGATC 9011 Query 20996 CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCC 21055 ||| | | |||| || | ||| || || | ||| ||| ||||| || || || || Sbjct 9012 GGTGGCACGCGCGAGCATGTGCGTGAGCAGCGAGTACGAGGCAATGTTGAAGGGCACGCC 9071 Query 21056 GAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||||||||||| || | |||||| || |||||| Sbjct 9072 GAGGCCCATGTCGCACGAGCGCTGGTAGAGTTGGCAG 9108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427773179485680