Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq90 118 8e-22 >seq90 Length=200924 Score = 118 bits (130), Expect = 8e-22 Identities = 286/426 (67%), Gaps = 14/426 (3%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||||| |||||||||| || || || ||| || | || || || | ||||| |||| Sbjct 194273 CGTCTGGTGGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTTGCCTCCATT 194332 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 ||||||||| || ||| || ||||| || || | |||||||||||| ||||| Sbjct 194333 TTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCG 194392 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 || |||||||| || ||| |||||||| || |||| || ||| || ||| || Sbjct 194393 CGCGACGAAGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTG---AAC-AA 194448 Query 22921 CCGTGTCAGGACGATGCAC----ATCAAATCATATCTGATGCCGTTGACATTGAGACGGC 22976 ||| ||| | || || | | ||||||| | || ||||| | |||||| | || Sbjct 194449 CCGCCCCAGCAAGAAGCTCGTTGAGGAAATCATCACCGACGCCGTCGTCATTGAAAAGGA 194508 Query 22977 TTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACT 23036 ||| | ||||| || |||| || || ||||| || |||| | Sbjct 194509 ATTCCTGACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGATCTCATGAAGCA 194568 Query 23037 GTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAA 23096 |||||| ||||||| || || || ||||| | |||||| || | | ||| || || Sbjct 194569 GTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCCCTCGGCAACGACAAG--GTCTAC 194626 Query 23097 CGTT--GCCAATCCATTTGATTTCATGGATAACAT-TAGCATTGAAGGTAAAACAAACTT 23153 || | | || || ||||| |||||||| ||||| | || | | || || || ||||| Sbjct 194627 CGCTCCACGAACCCCTTTGACTTCATGGAGAACATCTCGC-TGGGCGGCAAGACCAACTT 194685 Query 23154 CTTTGA 23159 |||||| Sbjct 194686 CTTTGA 194691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356231251196023