Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq21 140 4e-28 >seq21 Length=78807 Score = 140 bits (154), Expect = 4e-28 Identities = 443/678 (65%), Gaps = 14/678 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCA--TCATCATTTACTCGTTTCA 72031 ||||| || || || || ||||||| | ||| || | | || || | || || |||| Sbjct 61390 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTC-CGAGTTCTTC-TCAACACGCTTCA 61333 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | ||||| ||||| ||||| || || | || || || | || | |||||| || | Sbjct 61332 TGAAGAGGTCAGGGATCCACAGCGCCAGGAAAAGGTCACGGGCGCGGACCTCCTCCTTGC 61273 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | ||||| || || ||||| | | | ||| | |||||||| |||| ||| | Sbjct 61272 CGTGGTTCTTGCGCAGGTCAAGGAAGTCAAACACATCCGCGTGCCACGGCTCCAGGTAAA 61213 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 |||| | | || || || ||||| || |||||||| | ||| | || ||||| || Sbjct 61212 TGGCAAAGGCACCAGGGCGCTTGTTGCCGCCCTGATCGACGTAGCGGGCAGTGTTGTTGA 61153 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | || | || ||| ||||| ||||| ||||| | ||| ||||| |||| || || | Sbjct 61152 ACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTACGAGC 61093 Query 72272 CACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 || ||||||| || || ||||| | || || || || ||||| || ||||| | Sbjct 61092 CAGTGGCACGGATGCGATGGACATTGA--GTCCGATACCACCGGCCATCTTGGAGATCAT 61035 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || || || | ||||| || |||||||| || || ||| |||||| || || Sbjct 61034 AGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAG 60975 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || || |||| ||| | || || || || || | || || || ||||| Sbjct 60974 GAAGCAAGATGACAGCTGGGCCTGGGGCGTACCAGCGTTGAACAGAGTGGGCGAGGCGTG 60915 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGC-TGAT--TCTATATCCCA 72506 || || | || |||| || ||||||||||||||| | ||| || | || | Sbjct 60914 GGTGAAGAACTTGCTCGACATGAGGTTGTACGTCTCAATAACACGATCAACTCTGTCGCC 60855 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 | || || || || |||||||| | ||| ||||| || | || || |||||| Sbjct 60854 CCAA---ATGCCAACAGCCACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCC 60798 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 | || |||| || ||| || || | ||| || || ||||| || | ||| || Sbjct 60797 GTCTAGCTTCAGCAGGTACGAACGCTCTAGAGTCTTGAAGCCAAAGTACTGGTAGTTGAA 60738 Query 72627 GTCTCGTTCGTAAATAAT 72644 ||| || ||||| | ||| Sbjct 60737 GTCACGGTCGTACACAAT 60720 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||||| || ||||| ||||| | | || || | |||||| || ||||||||| Sbjct 62584 TCCTGGTCCACAGTGAACTGGATGGGCGCAGCAGCAGCCTGCGTACGCAGGTAGTACATG 62525 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || || || ||||| || |||| ||| ||| ||||| || || | ||| |||| | Sbjct 62524 CCCGTCTTGAGACCCAGCTTCCAGCCGGCAAAGTGCATGCTGGTAATCTTGCCCATAG-T 62466 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 ||| || ||||| || || | |||||| || ||||| ||||| || | ||| || Sbjct 62465 AGGGTCCTTCATGTGGATGTTGAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCAGC 62406 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015 |||||| | | | ||| ||| | ||| ||||| | ||| || || Sbjct 62405 AGCCATCTGCACAACCGTACGTTGCGAAATCTCCCACACAGTCTTGTA 62358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134661421160