Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20musarum_20[genbank_20GCA_5F001513885.1_202016-01-13] 541 sequences; 28,417,647 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq90 239 7e-58 seq21 172 8e-38 seq180 116 5e-21 seq113 86.0 9e-12 >seq90 Length=200924 Score = 239 bits (264), Expect = 7e-58 Identities = 573/851 (67%), Gaps = 37/851 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||||| ||| ||| | |||||| Sbjct 193868 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACGGCCGAGGAGATTGATCTG 193927 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | || ||| | |||| | || || ||| Sbjct 193928 TCCAAGGATCTCCACGACTGGAACAACCGCATGAACAAGGATGAGAAGTATTTCATCTCG 193987 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | ||||||| ||||| | ||| || || || |||||||| || || ||||| || Sbjct 193988 CACGTCCTGGCCTTTTTTGCTGCCTCGGACGGCATTGTCAACGAGAACCTGGTTGA-GCG 194046 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||||| ||| | || || |||| ||||| ||||| ||||| |||||||| Sbjct 194047 TTTCTCGGGCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 194106 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCC 125314 |||||| | |||||||| | |||||| || || |||| |||||| || | | Sbjct 194107 GGAGAACATCCACTCGGAGACGTACTCGCTGCTCATCGACACGTACATCAAGGAGCCTGC 194166 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 || || | || || || ||||| |||||||| | || | || || ||||| Sbjct 194167 CCAGCGCAGCTAC---CTGTTCAACGCCATCGACACCATTCCCTGCATCCGCCGCAAGGC 194223 Query 125375 TCAATGGGTGATTCGGTGGAT---CGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 | |||| | |||||| |||| || | |||| | | ||| | | ||||| Sbjct 194224 CGACTGGGCCCTCAAGTGGATTTCCGAT--CG-CGAGTCGACCTTTGCCCAGCGTCTGGT 194280 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 ||| || |||||||| |||||||||||||| ||||| ||||| |||| || ||||| Sbjct 194281 GGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTTGCCTCCATTTTCTGGCT 194340 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 ||||| || || |||||||| ||||| |||||| | || || || ||||| Sbjct 194341 GCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGCGACGA 194400 Query 125552 GGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGC 125609 ||||| ||| ||||||||| || || || ||||| || | | | ||| || Sbjct 194401 AGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACAACCGCCCCAG-CA 194459 Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 ||| | || || ||| |||| | ||||| ||||| || ||| | || Sbjct 194460 AGAAGC-TCGTTG---AGGAAATCA------TCACCGACGCCGTCGTCATTGAAAAGGAA 194509 Query 125670 TTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAG 125729 || || ||||| |||| || | | || | ||||||||| | | || ||| || Sbjct 194510 TTCCTGACCGAGGCCCTGCCCTGCGCCCTGCTCGGCATGAACGCCGATCTCATGAAGCAG 194569 Query 125730 TACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATTT 125784 ||||| |||||||| || || ||||| ||| |||| | ||| || |||| | | Sbjct 194570 TACATTGAGTTTGTCGCCGACCGTCTGCTG-----GTTGCCCTCGGCAACGACAAGGTCT 194624 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 || | ||| ||| |||||||| |||||| | ||| || || | || |||||||||| Sbjct 194625 ACCGCTCCACGAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGCAAGACCAACT 194684 Query 125845 TTTTCGAGAAG 125855 | || |||||| Sbjct 194685 TCTTTGAGAAG 194695 >seq21 Length=78807 Score = 172 bits (190), Expect = 8e-38 Identities = 353/512 (69%), Gaps = 12/512 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| || || || || || | ||| | ||| |||| || ||||||||||| Sbjct 61179 CAGGGCGGCAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCGGAT 61238 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || |||||||| | || ||||||| ||| ||| || |||| || ||| | ||| Sbjct 61239 GTGTTTGACTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGTGAC 61298 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC-TA 97054 | || || || ||| | || || | ||||||||||| || | || | | | Sbjct 61299 CTTTTCCTGGCGCTGTGGATCCCTGACCTCTTCATGAAGCGTGTTGA-GAAGAACTCGGA 61357 Query 97055 CTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTT 97114 ||||| || ||||||||| || || || || ||| | || |||| ||||| ||||| Sbjct 61358 CTGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGACTGCTACGGCGAGGAGTT 61417 Query 97115 TGAGGCCAAGTAC--ACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGC 97171 |||||| |||| | || |||||||| |||||||| || | | ||| || | || Sbjct 61418 TGAGGCTCTGTACGAAAGG--TACGAGCAGGAGGGCCGTGGCCGCGCGTCGA-TCAAGGC 61474 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | ||||| || ||||||| ||||| || | |||| || | Sbjct 61475 -CCAGAAGCTATGGTACGCCATTCTGGAGGCTCAGACCGAGACGGGCAACCCGTTTATGC 61533 Query 97231 TCTACAAGGA-TACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 | |||||||| || || || ||||| |||||||| || ||||||||||| || Sbjct 61534 TGTACAAGGACCACTGT-AACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGC 61592 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTT 97349 ||||| |||||||| || ||| | |||||| | || || ||| || || ||| Sbjct 61593 TCCAACCTGTGCACCGAGATTATCGAGTACTGTGCGCCCGATGAGGTTGCCGTATGCAAC 61652 Query 97350 CTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 ||||| ||| | |||||| |||||| || Sbjct 61653 CTGGCTTCGCTGGCTCTGCCGGCGTTTGTCGA 61684 >seq180 Length=32333 Score = 116 bits (128), Expect = 5e-21 Identities = 165/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 ||||||||| |||| || |||||||| ||||||||| |||| | ||| | ||||||| Sbjct 9449 GAGGGCGATTTGGGCCCCGTGTACGGGTTCCAGTGGCGGCATTTTGGCGCAGAGTATGTC 9390 Query 70124 GACTGCG-AGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 || |||| |||| ||||| |||||||||| || ||||| || | | | ||| Sbjct 9389 GA-TGCGCAGACGGACTACACGGGTCAGGGCGTCGATCAGCTGGCGGAGGTGGTGCACAA 9331 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 || |||| | ||| ||| | | ||| | ||| | | |||||||| || ||||| Sbjct 9330 GCTGAAGAATACTCCGTACGATCGACGCATCATCATGAGTGCGTGGAATCCGGCGGATTT 9271 Query 70243 GCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288 | | | ||||| || |||||||||||| ||||| || ||||||||| Sbjct 9270 GAAGAAGATGGCGCTGCCACCGTGTCACATGTTT-GCGCAGTTTTAC 9225 >seq113 Length=190788 Score = 86.0 bits (94), Expect = 9e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| | || | || ||||| | || | ||||||||||||||||||| Sbjct 69667 TTGCGGAAGAAGATCATGGCGCCACGGGGACCGCGCAGCGACTTGTGCGTTGTAGTGGTC 69726 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || ||||| |||| | ||||| || | || | | | || | || ||||| ||| Sbjct 69727 ACGATGTCGGCGTACTGCCACGGGCCGGGCAGCACGTCGGCAGCCAGCATGCCCGAGATG 69786 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTC 127268 || ||||| |||||||| || ||| ||| | ||||||||||| Sbjct 69787 TGGGCAATGTCGGCCATTAGATAGGCACCGACCTTTTCGGCAATCTC 69833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054188587160